PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G134800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 298aa    MW: 34748.2 Da    PI: 10.08
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G134800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.61.9e-2961111151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                         +rienk+ rqvtfskRrng+lKKA+ELS LCdaeva+iifss+gkl+e++s
  Potri.015G134800.1  61 ERIENKISRQVTFSKRRNGLLKKAYELSLLCDAEVALIIFSSRGKLFEFCS 111
                         69***********************************************96 PP
2K-box92.48.1e-311302255100
               K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                         +g++  e+ +++l+qe+++L+++ e+Lqr+qR++lGe+Le+L++keL+++e+qL+k l++ R++K++l+++ +eel+k+e++l+e+n++L 
  Potri.015G134800.1 130 EGTNIPEEGSQTLYQEVSRLRARCESLQRSQRNFLGEELEPLTVKELKKIEKQLDKTLSEARQRKTQLMFDRVEELRKREQDLKEKNQQLW 220
                         6677889999********************************************************************************9 PP

               K-box  96 kklee 100
                          klee
  Potri.015G134800.1 221 IKLEE 225
                         99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-4053112IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.53953113IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-3154136IPR002100Transcription factor, MADS-box
CDDcd002657.82E-4054128No hitNo description
PROSITE patternPS00350055109IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-305575IPR002100Transcription factor, MADS-box
PfamPF003198.7E-2662109IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-307590IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-3090111IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.921139229IPR002487Transcription factor, K-box
PfamPF014865.2E-25139223IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MMSSSYFVTQ RAKTQLGIPL MEKQPIYRKR VVLSFLTLFL VLLGFLLQEG KQMGRGKVVL  60
ERIENKISRQ VTFSKRRNGL LKKAYELSLL CDAEVALIIF SSRGKLFEFC SSTDINKTLQ  120
RYQQCCYSTE GTNIPEEGSQ TLYQEVSRLR ARCESLQRSQ RNFLGEELEP LTVKELKKIE  180
KQLDKTLSEA RQRKTQLMFD RVEELRKREQ DLKEKNQQLW IKLEEVQRLP AIHGVGDPIK  240
GDGNRQIMMD PSKFNYVEPQ PSLQMDQHQQ FVSQEQGFDP RTSIRGKNKY PTPKWFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-2053124171MEF2C
5f28_B2e-2053124171MEF2C
5f28_C2e-2053124171MEF2C
5f28_D2e-2053124171MEF2C
6byy_A2e-2053124171MEF2 CHIMERA
6byy_B2e-2053124171MEF2 CHIMERA
6byy_C2e-2053124171MEF2 CHIMERA
6byy_D2e-2053124171MEF2 CHIMERA
6bz1_A2e-2053124171MEF2 CHIMERA
6bz1_B2e-2053124171MEF2 CHIMERA
6bz1_C2e-2053124171MEF2 CHIMERA
6bz1_D2e-2053124171MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G134800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441663.10.0MADS-box transcription factor 6
SwissprotQ8LLR11e-76MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A2K1XMH20.0A0A2K1XMH2_POPTR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.12e-67AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]