PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G129100.1
Common NamePOPTR_0015s14600g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 275aa    MW: 30833.5 Da    PI: 6.3893
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G129100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++lv  +  +G  +W+++++  g++R++k+c++rw +yl
  Potri.015G129100.1 14 KGPWTAEEDKKLVSFILSHGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                        79********************************************97 PP
2Myb_DNA-binding51.52.3e-1672111647
                         HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
  Potri.015G129100.1  72 DDEEKLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                         69***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-21562IPR009057Homeodomain-like
PROSITE profilePS5129414.752961IPR017930Myb domain
SuperFamilySSF466891.35E-2611108IPR009057Homeodomain-like
SMARTSM007174.1E-131363IPR001005SANT/Myb domain
PfamPF002492.9E-151461IPR001005SANT/Myb domain
CDDcd001676.09E-101661No hitNo description
PROSITE profilePS5129425.96662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.3E-2463117IPR009057Homeodomain-like
SMARTSM007172.3E-1466114IPR001005SANT/Myb domain
CDDcd001671.83E-1171112No hitNo description
PfamPF002491.6E-1472111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDKKLVSFIL SHGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL NDDEEKLVID LHARLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLIKMG  120
IDPVTHGSLS KQVSPQESTV SCHTNYDQPI INADNQQVLP KICAHASSRT DNSSTTTTPT  180
ENSSVDECVG SSEPNNDNDP TMSFIWSEAF LDDSSWNFQA TREDYSEFGV SNSSSDQDSY  240
STWFLDCKDL GDEFFGLSCF SDMDLSILDM GGKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28141167108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.162320.0bud| catkin
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in mature flowers and decreases upon pollination. {ECO:0000269|PubMed:15805488}.
UniprotTISSUE SPECIFICITY: Restricted to the petals, with the highest expression in the limb. {ECO:0000269|PubMed:15805488}.
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G129100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9795530.0KM979553.1 Populus tomentosa R2R3 MYB transcription factor (MYB75) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321838.30.0protein ODORANT1
SwissprotQ50EX61e-93ODO1_PETHY; Protein ODORANT1
TrEMBLA0A2K1XM700.0A0A2K1XM70_POPTR; Uncharacterized protein
STRINGPOPTR_0015s14600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65334142
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.13e-84myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]