PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G126500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 127aa MW: 13863.9 Da PI: 8.2201 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.1 | 2.7e-12 | 26 | 113 | 13 | 96 |
TT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEE CS B3 13 sgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkv 96 + rl++p +++ + +g+ ++++ + d+ g+ W++kl+ + ++ + v+++ W +Fvk++g+k+gD+v+++ +++ +e+++ ++v Potri.015G126500.1 26 EERLSVPASCLHFFpmpEGV--REIEFQAIDTLGKLWTFKLSCrSEGPPKPVIAGQWLSFVKDKGVKVGDTVTISQQNNgtNEGQYSISV 113 4789***9999555876656..67799999***********554555555************************9553223555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.73E-12 | 11 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-12 | 14 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.543 | 14 | 117 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.24E-15 | 14 | 105 | No hit | No description |
SMART | SM01019 | 0.006 | 16 | 117 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-8 | 26 | 106 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
DTTAEPSIRE PSIKVISKSL SRTDIEERLS VPASCLHFFP MPEGVREIEF QAIDTLGKLW 60 TFKLSCRSEG PPKPVIAGQW LSFVKDKGVK VGDTVTISQQ NNGTNEGQYS ISVSRKLFNV 120 LATLPA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.9664 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G126500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147620 | 0.0 | EF147620.1 Populus trichocarpa clone WS0123_N24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006374661.2 | 1e-88 | uncharacterized protein LOC18105924 | ||||
TrEMBL | A9PGX7 | 3e-87 | A9PGX7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s14860.1 | 4e-87 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11016 | 3 | 36 |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G126500.1 |
Publications ? help Back to Top | |||
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