PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G125500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 169aa MW: 19167.9 Da PI: 8.9428 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.2 | 3.2e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ien + rqvtfskRr g++KK +ELSvLCdae+ +i+fss+g+l e++s Potri.015G125500.1 10 KIENRTARQVTFSKRRVGLFKKTHELSVLCDAEIGLIVFSSNGNLSEFCS 59 69**********************************************96 PP | |||||||
2 | K-box | 55.1 | 3.2e-19 | 78 | 147 | 8 | 76 |
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 + e++++e+ +el++++ke++ Lq + R ++Ge+L+sL +++L +Le+qLe s++k+R++K+++ + + Potri.015G125500.1 78 RvSESNDSEQILKELKRIRKETDDLQLSMRCYKGESLSSLHYEDLVELEKQLECSVNKVRARKHQVATLE 147 44567888999******************************************************97654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.735 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.5E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.10E-33 | 2 | 72 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.07E-27 | 3 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.7E-16 | 80 | 145 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.375 | 85 | 168 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MARGKIAITK IENRTARQVT FSKRRVGLFK KTHELSVLCD AEIGLIVFSS NGNLSEFCSE 60 SSSIPHIIKR YEISKGMRVS ESNDSEQILK ELKRIRKETD DLQLSMRCYK GESLSSLHYE 120 DLVELEKQLE CSVNKVRARK HQVATLEQQH DGEARGTAEN ARGIPVFW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-16 | 1 | 94 | 1 | 90 | MEF2 CHIMERA |
6byy_B | 1e-16 | 1 | 94 | 1 | 90 | MEF2 CHIMERA |
6byy_C | 1e-16 | 1 | 94 | 1 | 90 | MEF2 CHIMERA |
6byy_D | 1e-16 | 1 | 94 | 1 | 90 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G125500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441917.1 | 3e-97 | MADS-box protein defh21 | ||||
Swissprot | Q9ATE5 | 9e-50 | FBP24_PETHY; MADS-box protein FBP24 | ||||
TrEMBL | A0A3N7G4R5 | 2e-95 | A0A3N7G4R5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s14950.1 | 6e-96 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4935 | 29 | 52 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.1 | 7e-51 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G125500.1 |
Publications ? help Back to Top | |||
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