PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G125500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 169aa    MW: 19167.9 Da    PI: 8.9428
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G125500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.23.2e-261059251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        +ien + rqvtfskRr g++KK +ELSvLCdae+ +i+fss+g+l e++s
  Potri.015G125500.1 10 KIENRTARQVTFSKRRVGLFKKTHELSVLCDAEIGLIVFSSNGNLSEFCS 59
                        69**********************************************96 PP

2K-box55.13.2e-1978147876
               K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 
                         +  e++++e+  +el++++ke++ Lq + R ++Ge+L+sL +++L +Le+qLe s++k+R++K+++ + +
  Potri.015G125500.1  78 RvSESNDSEQILKELKRIRKETDDLQLSMRCYKGESLSSLHYEDLVELEKQLECSVNKVRARKHQVATLE 147
                         44567888999******************************************************97654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.735161IPR002100Transcription factor, MADS-box
SMARTSM004327.5E-36160IPR002100Transcription factor, MADS-box
CDDcd002651.10E-33272No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.07E-27378IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-25323IPR002100Transcription factor, MADS-box
PfamPF003194.0E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-253859IPR002100Transcription factor, MADS-box
PfamPF014862.7E-1680145IPR002487Transcription factor, K-box
PROSITE profilePS5129710.37585168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MARGKIAITK IENRTARQVT FSKRRVGLFK KTHELSVLCD AEIGLIVFSS NGNLSEFCSE  60
SSSIPHIIKR YEISKGMRVS ESNDSEQILK ELKRIRKETD DLQLSMRCYK GESLSSLHYE  120
DLVELEKQLE CSVNKVRARK HQVATLEQQH DGEARGTAEN ARGIPVFW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-16194190MEF2 CHIMERA
6byy_B1e-16194190MEF2 CHIMERA
6byy_C1e-16194190MEF2 CHIMERA
6byy_D1e-16194190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G125500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441917.13e-97MADS-box protein defh21
SwissprotQ9ATE59e-50FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A3N7G4R52e-95A0A3N7G4R5_POPTR; Uncharacterized protein
STRINGPOPTR_0015s14950.16e-96(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.17e-51MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]