PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.015G105800.1

Common Name

POPTR_0015s11710g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 300aa MW: 34823.9 Da PI: 7.3759

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.015G105800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	71.9	1.1e-22	38	132	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 rWt+qe+ +Lie ++ +e+r++ ++ +++ +W++vs++++++g++r+p+qC+++w n+ ++kkik++e+++ +e++s + + Potri.015G105800.1 38 RWTRQETFVLIESKKVVENRFQWSRrstsalgsdQIESKWDSVSSYCSQHGVNRGPVQCRKRWGNMLCDFKKIKTWESQQMNETESFWMMR 128 8*******************653345566666********************************************99999999999 PP trihelix 83 dqle 86 ++l+ Potri.015G105800.1 129 NELR 132 9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.271	31	104	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.7E-4	31	105	IPR009057	Homeodomain-like
Pfam	PF13837	1.9E-13	37	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MVSESNDGQE TQELSRPNGV RKEQALDVDD KTKTRHPRWT RQETFVLIES KKVVENRFQW 60 SRRSTSALGS DQIESKWDSV SSYCSQHGVN RGPVQCRKRW GNMLCDFKKI KTWESQQMNE 120 TESFWMMRNE LRRERKLPSF FDKEVYYVLD GRVITTDAIP LSQITFKKQM DCIDRDEAAT 180 AEEEEEEHEY TEANLDSSQC ARAEDGTTKK QNLGTKTRKG SMSREGKKRR LSSDESEDPD 240 LEDRLIKVLG RNMSMLNSQL KAQNINCQLD REQRKDHNDS LVRALNKLTD AIVKIADKL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.015G105800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024441942.1	0.0	trihelix transcription factor ASR3
Swissprot	Q8VZ20	1e-81	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A3N7G0X8	0.0	A0A3N7G0X8_POPTR; Uncharacterized protein
STRING	POPTR_0015s11710.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2165	33	75
Representative plant	OGRP1747	13	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-79	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Potri.015G105800.1
Entrez Gene	7456645

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]