PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G099200.3 | ||||||||
Common Name | POPTR_0015s11130g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 126aa MW: 14122.9 Da PI: 10.3057 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 37.8 | 3.8e-12 | 99 | 121 | 1 | 23 |
---SS-EEEEEEE--TT-SS-EE CS WRKY 1 ldDgynWrKYGqKevkgsefprs 23 ldDgy+WrKYGqK+vk+s+fpr Potri.015G099200.3 99 LDDGYRWRKYGQKTVKSSKFPRT 121 59********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.5E-13 | 84 | 121 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-10 | 91 | 122 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.527 | 94 | 125 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.0041 | 99 | 125 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.1E-8 | 100 | 121 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MPMEKYQIFL PVSGPSSPSV SPSSLNMANP LIYFHGDSEN GVKPESRFQH LDAKSSVSQT 60 SRICNGSEFK VKPGKRGGDS DDFRKHRYAF QTRSQVDILD DGYRWRKYGQ KTVKSSKFPR 120 TKIGC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.11183 | 0.0 | bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G099200.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF179613 | 0.0 | EF179613.1 (Populus tomentosa x P. bolleana) x P. tomentosa putative WRKY transcription factor 01 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322274.1 | 8e-74 | probable WRKY transcription factor 43 | ||||
TrEMBL | B9IFE4 | 2e-72 | B9IFE4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s11130.1 | 3e-73 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 2e-18 | WRKY DNA-binding protein 75 |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G099200.3 |
Entrez Gene | 7463139 |