PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G098900.1 | ||||||||
Common Name | POPTR_0015s11100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | SBP | ||||||||
Protein Properties | Length: 382aa MW: 41809.4 Da PI: 8.4421 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.7 | 6e-42 | 93 | 170 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C v+gC++dls +++yhrrhkvCe hsk+p+v+v g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ Potri.015G098900.1 93 MCLVDGCNSDLSACRDYHRRHKVCELHSKTPQVTVGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 170 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.8E-34 | 87 | 155 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.026 | 91 | 168 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.32E-39 | 92 | 173 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.1E-31 | 94 | 167 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MDWNLKATSW DLTEFEQGAV PSISIDAFDR STNFGVNRSG GGFSIDLKLG RVGDSSDESI 60 INWKQPGVSK LQPLPSGSTK RARGANSGTQ VAMCLVDGCN SDLSACRDYH RRHKVCELHS 120 KTPQVTVGGQ KQRFCQQCSR FHSLEEFDEG KRSCRKRLDG HNRRRRKPQP DPHSRPPSFL 180 SNYQGTQLFP FSSSHVYPSS TVLNPTWSGV ASTEADGRHH NLHQLPDKQN LFFGSSSSSY 240 HGVKQFPFLH WHSPGLNNQT SPEASVCQPL LRTIALPGSS GASSHSMFCD RLTQIQDSDC 300 ALSLLSSTQT HASGNLMVQH NSVPLSHPIG PTVHDHGLGP IDSVLVFNNR DANVHFPGTF 360 QPQSGGSSGN KAPQTLPFNW E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-28 | 84 | 167 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 167 | KRSCRKRLDGHNRRRRKP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00555 | DAP | Transfer from AT5G50570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G098900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322273.3 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_024441807.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_024441808.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_024441809.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
TrEMBL | A0A2K1XKS2 | 0.0 | A0A2K1XKS2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s11100.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2591 | 33 | 78 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-74 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G098900.1 |
Entrez Gene | 7454733 |