PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G098400.5
Common NamePOPTR_0015s11040g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 197aa    MW: 22853.2 Da    PI: 10.7894
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G098400.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.12.3e-28959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien+  rqvtfskRrng+lKKA+ELS+LC+aev++iifs++gk+y +ss
  Potri.015G098400.5  9 KRIENSASRQVTFSKRRNGLLKKAFELSILCEAEVSLIIFSPSGKFYQFSS 59
                        79***********************************************96 PP
2K-box72.61.1e-2480171899
               K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         ++ ++  e ++ e++ L++ i + + ++Rh++Ged+ +L lkeL+qLe+qL++++++iRskK++++ e+i+ l+  +++lqeen +L+k+l
  Potri.015G098400.5  80 DQRSRSLEFWRCEIEELRRTITKTEAQLRHFIGEDIAPLGLKELKQLERQLKTGVERIRSKKKRVISEHIKLLKSEQRALQEENARLQKRL 170
                         46777899********************************************************************************998 PP

               K-box  99 e 99 
                          
  Potri.015G098400.5 171 H 171
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.693161IPR002100Transcription factor, MADS-box
CDDcd002656.58E-37270No hitNo description
SuperFamilySSF554551.31E-31287IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-293859IPR002100Transcription factor, MADS-box
PfamPF014863.5E-2383170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.61786176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGRGKVELKR IENSASRQVT FSKRRNGLLK KAFELSILCE AEVSLIIFSP SGKFYQFSSH  60
DMERSVARYR SEVGLPGTND QRSRSLEFWR CEIEELRRTI TKTEAQLRHF IGEDIAPLGL  120
KELKQLERQL KTGVERIRSK KKRVISEHIK LLKSEQRALQ EENARLQKRL HELPDANVSS  180
RIPEPNACNA FHQQRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-21169169MEF2 CHIMERA
6byy_B2e-21169169MEF2 CHIMERA
6byy_C2e-21169169MEF2 CHIMERA
6byy_D2e-21169169MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.121310.0bud| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G098400.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1450250.0EF145025.1 Populus trichocarpa clone WS0111_J17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321711.11e-140truncated transcription factor CAULIFLOWER D
TrEMBLA9PA191e-138A9PA19_POPTR; Uncharacterized protein
STRINGVIT_17s0000g01230.t015e-90(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.11e-41AGAMOUS-like 19
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]