PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G098400.4 | ||||||||
Common Name | POPTR_0015s11040g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 201aa MW: 23229.7 Da PI: 10.6987 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.1 | 2.3e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+ rqvtfskRrng+lKKA+ELS+LC+aev++iifs++gk+y +ss Potri.015G098400.4 9 KRIENSASRQVTFSKRRNGLLKKAFELSILCEAEVSLIIFSPSGKFYQFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 73.8 | 4.7e-25 | 80 | 170 | 8 | 98 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ ++ e ++ e++ L++ i + + ++Rh++Ged+ +L lkeL+qLe+qL++++++iRskK++++ e+i+ l+ +++lqeen +L+k+l Potri.015G098400.4 80 DQRSRSLEFWRCEIEELRRTITKTEAQLRHFIGEDIAPLGLKELKQLERQLKTGVERIRSKKKRVISEHIKLLKSEQRALQEENARLQKRL 170 46777899*******************************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.693 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-31 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.61E-37 | 2 | 70 | No hit | No description |
PRINTS | PR00404 | 2.6E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.6E-23 | 83 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.083 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MGRGKVELKR IENSASRQVT FSKRRNGLLK KAFELSILCE AEVSLIIFSP SGKFYQFSSH 60 DMERSVARYR SEVGLPGTND QRSRSLEFWR CEIEELRRTI TKTEAQLRHF IGEDIAPLGL 120 KELKQLERQL KTGVERIRSK KKRVISEHIK LLKSEQRALQ EENARLQKRL PDANVSSRIP 180 EPNACNAFHQ QRIFLEGSHQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 3e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 3e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 3e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 3e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 3e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 3e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 3e-21 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12131 | 0.0 | bud| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G098400.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF145025 | 0.0 | EF145025.1 Populus trichocarpa clone WS0111_J17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002321711.1 | 1e-142 | truncated transcription factor CAULIFLOWER D | ||||
TrEMBL | A9PA19 | 1e-140 | A9PA19_POPTR; Uncharacterized protein | ||||
STRING | VIT_17s0000g01230.t01 | 1e-89 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22950.1 | 3e-41 | AGAMOUS-like 19 |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G098400.4 |
Entrez Gene | 7463134 |
Publications ? help Back to Top | |||
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