PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G091200.1
Common NamePOPTR_0015s10310g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 524aa    MW: 58402.7 Da    PI: 6.397
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G091200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS377.61.6e-1151465161374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykalppsetseknsseelaalklfsevsPi 90 
                         lv+lL++cAeav+ +d++ a+alL++l+ +a   g+++qR+a++f+++L  rl+  ++ + +  +p+ +  +  s+++  al+l +e++P 
  Potri.015G091200.1 146 LVQLLIACAEAVACRDKSHASALLSELRSNALVFGSSFQRVASCFVQGLTDRLSLVQPlGAVGFVPTMNIMDIASDKKEEALRLVYEICPH 236
                         689***************************************************9443144445566666666699999************ PP

                GRAS  91 lkfshltaNqaIleavegeervHiiDfdi....sqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                         ++f+h++aN+aIlea+ege+ vH++D+++    s+G QW  L+++La+R++++p +lRiTgvg       ++ + +g+ L+++A+ +g+++
  Potri.015G091200.1 237 IRFGHFVANNAILEAFEGESFVHVVDLGMtlglSHGHQWRRLIESLAERAGKAPsRLRITGVGL----CVDRFRIIGDELKEYAKDMGINL 323
                         **************************87522227999*************877769********....*********************** PP

                GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                         ef++ v+++le+l++e++++++gE+l+Vn++lqlh +++es    +   +vL++v +lsPkv+v+veq+++hn++ Fl rf+eal+yysa+
  Potri.015G091200.1 324 EFSA-VESNLENLRPEDIKINEGEVLVVNSILQLHCVVKESRGALN---SVLQIVHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAI 410
                         ****.79*******************************88877777...8***************************************** PP

                GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                         fdsl+a lp+ +  r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++  +++qak  l k k  dgy+v ee+g+
  Potri.015G091200.1 411 FDSLDAMLPKYDTRRAKMEQFYFAEEIKNIVSCEGPARVERHERVYQWRRRMSRAGFQAAPIK--MMAQAKQWLVKNKvCDGYTVVEEKGC 499
                         *************************************************************96..688999999999989*********** PP

                GRAS 358 lvlgWkdrpLvsvSaWr 374
                         lvlgWk++p++++S+W+
  Potri.015G091200.1 500 LVLGWKSKPIIAASCWK 516
                         ****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.029120497IPR005202Transcription factor GRAS
PfamPF035145.4E-113146516IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MAHSFLSGEF NDENVSETSG LDLSLSAMAC YPRPPYLPTF DSNAVSWILP FSDDTRDAKR  60
MRRSSSLVES IRSNNSSLYS GGSSICRSIS TNILNSIPKL HFRDHIWTYT QRYLAAEAVE  120
EAASEAMINA DEGGNEEEGN ADGMRLVQLL IACAEAVACR DKSHASALLS ELRSNALVFG  180
SSFQRVASCF VQGLTDRLSL VQPLGAVGFV PTMNIMDIAS DKKEEALRLV YEICPHIRFG  240
HFVANNAILE AFEGESFVHV VDLGMTLGLS HGHQWRRLIE SLAERAGKAP SRLRITGVGL  300
CVDRFRIIGD ELKEYAKDMG INLEFSAVES NLENLRPEDI KINEGEVLVV NSILQLHCVV  360
KESRGALNSV LQIVHELSPK VLVLVEQDSS HNGPFFLGRF MEALHYYSAI FDSLDAMLPK  420
YDTRRAKMEQ FYFAEEIKNI VSCEGPARVE RHERVYQWRR RMSRAGFQAA PIKMMAQAKQ  480
WLVKNKVCDG YTVVEEKGCL VLGWKSKPII AASCWKCLIN SSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6315351526378Protein SCARECROW
5b3h_A3e-6315351525377Protein SCARECROW
5b3h_D3e-6315351525377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G091200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322227.10.0DELLA protein RGL1
TrEMBLB9IF610.0B9IF61_POPTR; Uncharacterized protein
STRINGPOPTR_0015s10310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Representative plantOGRP70521119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-80RGA-like 1