PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G082700.1
Common NamePOPTR_0015s09430g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 372aa    MW: 41907.8 Da    PI: 6.4355
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G082700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.8e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEde+l+++++++G g+W+++++  g+ R++k+c++rw +yl
  Potri.015G082700.1 14 KGLWSPEEDEKLLNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                        678*******************************************97 PP
2Myb_DNA-binding44.63.3e-1467112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k+ w++yl
  Potri.015G082700.1  67 RGMFSQQEEDLIISLHEVLGNR-WAQIAAQLP-GRTDNEIKNLWNSYL 112
                         788*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-25664IPR009057Homeodomain-like
PROSITE profilePS5129424.533965IPR017930Myb domain
SuperFamilySSF466895.24E-2912108IPR009057Homeodomain-like
SMARTSM007172.3E-121363IPR001005SANT/Myb domain
PfamPF002497.2E-151461IPR001005SANT/Myb domain
CDDcd001673.90E-111761No hitNo description
Gene3DG3DSA:1.10.10.607.0E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129419.38266116IPR017930Myb domain
SMARTSM007175.3E-1266114IPR001005SANT/Myb domain
PfamPF002491.9E-1367112IPR001005SANT/Myb domain
CDDcd001671.38E-970112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGRHSCCLKQ KLRKGLWSPE EDEKLLNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNLWNS YLKKKLMKQG  120
IDPTTHKPLC QVGVKEEKDC TEKASFQIPQ SKGLPIVSNF TAQEPAFLIN DTTYNSSGLP  180
EVSREQFLNK QAYDPLSYFE FPAGIDLTGY NPSLSSVYHP TVRSLDQNQF ETSSNFGFTS  240
MPSLTSFDHG SMSGTDFSDN SASRMSSMFL NEAKESSSNS SNISNYAGYQ MNNMVENAAA  300
FSSWDSDDHK LESVFQYHQV NGVKTEELKP SPWHEAGRLH THQNSVDFNS YPLTSLSEDI  360
TGANFDVFHQ I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.28030.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G082700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707850.0AB970785.1 Populus tremula x Populus tremuloides PtxtMYB148 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321627.10.0transcription factor MYB35
TrEMBLB9IEX50.0B9IEX5_POPTR; MYB family protein
STRINGPOPTR_0015s09430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.16e-84myb domain protein 50