PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G077700.1
Common NamePOPTR_0015s08880g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 437aa    MW: 49237.4 Da    PI: 5.9226
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G077700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.5e-17189235148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WTteEd +l+++v+q G + W  +a++++ gR +kqc++rw+++l
  Potri.015G077700.1 189 KGQWTTEEDRILIQLVEQNGVRKWCHVAQMLP-GRIGKQCRERWHNHL 235
                         799*****************************.*************97 PP
2Myb_DNA-binding574.6e-18241283145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         ++ W+ eEd+ l++a+ +lG++ W+ Ia++++ gRt++++k++w+
  Potri.015G077700.1 241 KDTWSVEEDKVLIQAHSELGNR-WAEIAKMLP-GRTENSIKNHWN 283
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.58184239IPR017930Myb domain
SuperFamilySSF466898.27E-31187282IPR009057Homeodomain-like
SMARTSM007171.1E-16188237IPR001005SANT/Myb domain
PfamPF002495.8E-16189235IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-24190241IPR009057Homeodomain-like
CDDcd001672.11E-15192235No hitNo description
PROSITE profilePS5129421.507240290IPR017930Myb domain
SMARTSM007179.1E-18240288IPR001005SANT/Myb domain
PfamPF002491.2E-16241283IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-21242288IPR009057Homeodomain-like
CDDcd001678.63E-14243286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MFLSNKPYMK EDYFPFETVP ASPSSKGFLQ DFDHLDDDHD SQFHANGSAS NPFFGVQTGS  60
NFDSFDAFPY GLSSDIDFYD YECKPFVGNI NGGGGHGHGQ VNEDLQSGAY LNMSCDQRNP  120
IDDIGSNQGH VSLNFEEITP VSFVVPDEVS CVSAATNECK RKMGLNKTRA LLPPARKAWK  180
GPKKNSIVKG QWTTEEDRIL IQLVEQNGVR KWCHVAQMLP GRIGKQCRER WHNHLRPNIK  240
KDTWSVEEDK VLIQAHSELG NRWAEIAKML PGRTENSIKN HWNATKRKQY SKRKCRPKYP  300
RASLLQDYIK SLNLDSGITG RGLGITTAST DIILDNDTRM KAPELLPRDL VLFKDNDDGL  360
VPNYSFNEVP DYDIHEKIFR GGCSVDSILD GLPCDDSVAH EKRLEMDVPE PDVTPFMGFE  420
VKKEVDLLEM ISQSKM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-451872892104C-Myb DNA-Binding Domain
1msf_C4e-451872892104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G077700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321603.20.0transcription factor MYB98
TrEMBLB9IES70.0B9IES7_POPTR; Uncharacterized protein
STRINGPOPTR_0015s08880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-99myb domain protein 98