PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G075800.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 35278.1 Da PI: 9.1639 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48 | 2.8e-15 | 104 | 148 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd +l d+vk +G+g W++ a+ g++R++k+c++rw +yl Potri.015G075800.2 104 WTAEEDRILMDYVKAHGKGKWNRAAKVTGLKRCGKSCRLRWINYL 148 ***********************999999**************97 PP | |||||||
2 | Myb_DNA-binding | 55.5 | 1.3e-17 | 155 | 197 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd+l+++++k+lG++ W++Ia +++ gRt++q+k++w++ Potri.015G075800.2 155 GGFSEEEDDLIIRLHKLLGNR-WSLIAGRVP-GRTDNQVKNHWNT 197 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.35 | 96 | 148 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.93E-30 | 99 | 195 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-11 | 100 | 150 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-13 | 104 | 148 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.67E-10 | 104 | 148 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-22 | 104 | 155 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.718 | 149 | 203 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-16 | 153 | 201 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-16 | 155 | 197 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-25 | 156 | 203 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.56E-12 | 157 | 197 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MSRNRSSFCK VDTTPCLPKD GCVFFPMEAH ETHGAFINEQ YIVVVYRVAT MRYNYYSRFQ 60 NFFLPTSLRQ GFVNNYKYLH IYSKHFAATT MEGAGSSEYR KAFWTAEEDR ILMDYVKAHG 120 KGKWNRAAKV TGLKRCGKSC RLRWINYLSP SVKHGGFSEE EDDLIIRLHK LLGNRWSLIA 180 GRVPGRTDNQ VKNHWNTRIS KKLGIKKGKC KISDSSSKFS KKLEANFHIK LSSNDEPISC 240 NNNTTEIELQ NVIESSHEKA KEITSTHEPT IRSDCFENFW LSIDEPYLCT PSLMELSDES 300 LGFFMA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-28 | 95 | 203 | 1 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Restricted to roots and hypocotyl. Specifically expressed in root non-hair developing cells (atrichoblasts) at the N position. Also present in lateral root cap cells. In hypocotyls, expressed within files of epidermal cells located outside a single cortical cell equivalent to roots N cells (at protein level). {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:16207757}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G075800.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024442276.1 | 1e-159 | transcription factor WER isoform X2 | ||||
Swissprot | Q9SEI0 | 4e-67 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A3N7G3Y7 | 1e-158 | A0A3N7G3Y7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s08700.1 | 1e-140 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 6e-61 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G075800.2 |