PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G075800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 310aa    MW: 35685.7 Da    PI: 8.8345
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G075800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.1e-12104151448
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48 
                         WT+eEd +l d+vk +G+g W+   +++      ++R++k+c++rw +yl
  Potri.015G075800.1 104 WTAEEDRILMDYVKAHGKGKWNP--KRFEccglgLKRCGKSCRLRWINYL 151
                         *******************8888..8888888****************97 PP
2Myb_DNA-binding55.51.3e-17158200246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +++eEd+l+++++k+lG++ W++Ia +++ gRt++q+k++w++
  Potri.015G075800.1 158 GGFSEEEDDLIIRLHKLLGNR-WSLIAGRVP-GRTDNQVKNHWNT 200
                         569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.19696151IPR017930Myb domain
SuperFamilySSF466893.45E-2899198IPR009057Homeodomain-like
SMARTSM007178.3E-8100153IPR001005SANT/Myb domain
PfamPF002491.8E-10104151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-19104158IPR009057Homeodomain-like
CDDcd001678.65E-8104151No hitNo description
PROSITE profilePS5129426.718152206IPR017930Myb domain
SMARTSM007175.4E-16156204IPR001005SANT/Myb domain
PfamPF002493.8E-16158200IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-25159206IPR009057Homeodomain-like
CDDcd001672.68E-12160200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSRNRSSFCK VDTTPCLPKD GCVFFPMEAH ETHGAFINEQ YIVVVYRVAT MRYNYYSRFQ  60
NFFLPTSLRQ GFVNNYKYLH IYSKHFAATT MEGAGSSEYR KAFWTAEEDR ILMDYVKAHG  120
KGKWNPKRFE CCGLGLKRCG KSCRLRWINY LSPSVKHGGF SEEEDDLIIR LHKLLGNRWS  180
LIAGRVPGRT DNQVKNHWNT RISKKLGIKK GKCKISDSSS KFSKKLEANF HIKLSSNDEP  240
ISCNNNTTEI ELQNVIESSH EKAKEITSTH EPTIRSDCFE NFWLSIDEPY LCTPSLMELS  300
DESLGFFMA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-279620622128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Restricted to roots and hypocotyl. Specifically expressed in root non-hair developing cells (atrichoblasts) at the N position. Also present in lateral root cap cells. In hypocotyls, expressed within files of epidermal cells located outside a single cortical cell equivalent to roots N cells (at protein level). {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:16207757}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G075800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442275.11e-144transcription factor WER isoform X1
SwissprotQ9SEI04e-61WER_ARATH; Transcription factor WER
TrEMBLA0A3N7G3Y71e-140A0A3N7G3Y7_POPTR; Uncharacterized protein
STRINGPOPTR_0015s08700.11e-161(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.15e-55myb domain protein 66
Publications ? help Back to Top
  1. Savage N, et al.
    Positional signaling and expression of ENHANCER OF TRY AND CPC1 are tuned to increase root hair density in response to phosphate deficiency in Arabidopsis thaliana.
    PLoS ONE, 2013. 8(10): p. e75452
    [PMID:24130712]
  2. Cheng Y, et al.
    Brassinosteroids control root epidermal cell fate via direct regulation of a MYB-bHLH-WD40 complex by GSK3-like kinases.
    Elife, 2018.
    [PMID:24771765]
  3. Kiefer CS, et al.
    Correction: Arabidopsis AIP1-2 restricted by WER-mediated patterning modulates planar polarity.
    Development, 2015. 142(5): p. 1022
    [PMID:25715402]
  4. Kwak SH,Song SK,Lee MM,Schiefelbein J
    TORNADO1 regulates root epidermal patterning through the WEREWOLF pathway in Arabidopsis thaliana.
    Plant Signal Behav, 2015. 10(12): p. e1103407
    [PMID:26451798]
  5. Zhu Y, et al.
    The Histone Chaperone NRP1 Interacts with WEREWOLF to Activate GLABRA2 in Arabidopsis Root Hair Development.
    Plant Cell, 2017. 29(2): p. 260-276
    [PMID:28138017]
  6. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]
  7. Mira MM, et al.
    Expression of Arabidopsis class 1 phytoglobin (AtPgb1) delays death and degradation of the root apical meristem during severe PEG-induced water deficit.
    J. Exp. Bot., 2017. 68(20): p. 5653-5668
    [PMID:29059380]
  8. Kohanová J, et al.
    Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots.
    Ann. Bot., 2018. 122(5): p. 903-914
    [PMID:29394308]