PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G075600.1 | ||||||||
Common Name | POPTR_0015s08680g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 218aa MW: 24975.5 Da PI: 9.3302 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.4 | 8.9e-15 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l d+vk +G+g W++ a+ g++R +k+c++rw +yl Potri.015G075600.1 11 KGLWTVEEDRILMDYVKVHGKGKWNRAAKVAGLKRGGKSCRLRWMNYL 58 678*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 59.3 | 8.4e-19 | 64 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48 rg++++eEd+l+++++k+lG++ +W++Ia +++ gRt++q+k++w+++l Potri.015G075600.1 64 RGAFSEEEDDLIIRLHKLLGNRflfiSWSLIAGRIP-GRTDNQVKNHWNTHL 114 89**********************************.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.035 | 6 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.58E-28 | 9 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.4E-11 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-13 | 11 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 12 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.56E-9 | 14 | 58 | No hit | No description |
PROSITE profile | PS51294 | 23.387 | 59 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-12 | 63 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-17 | 64 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.67E-12 | 66 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 66 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MEGAGSREYR KGLWTVEEDR ILMDYVKVHG KGKWNRAAKV AGLKRGGKSC RLRWMNYLSP 60 SVKRGAFSEE EDDLIIRLHK LLGNRFLFIS WSLIAGRIPG RTDNQVKNHW NTHLSIKLGV 120 KKGKSKISSS KFSKKIEASF NTKLSSNERL IPSNKTETEL QNVIEDSHEK EIEITSTHEP 180 ILTSDCYENF WLFNDDSYLF TPSLMELLDE SLESFMA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-26 | 8 | 118 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Restricted to roots and hypocotyl. Specifically expressed in root non-hair developing cells (atrichoblasts) at the N position. Also present in lateral root cap cells. In hypocotyls, expressed within files of epidermal cells located outside a single cortical cell equivalent to roots N cells (at protein level). {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:16207757}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G075600.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024442199.1 | 1e-141 | transcription factor WER | ||||
Swissprot | Q9SEI0 | 3e-67 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A2K1XJK8 | 1e-139 | A0A2K1XJK8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s08680.1 | 1e-159 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 6e-60 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G075600.1 |
Entrez Gene | 7457734 |