PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.015G068100.1

Common Name

POPTR_0015s07930g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 275aa MW: 30158.3 Da PI: 6.0559

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.015G068100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.8	1.3e-10	155	202	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i ++++ L++l+P + +k Ka +L + ++YI+sLq Potri.015G068100.1 155 SHSLAERARREKISERMNMLQDLVPGC----NKVIGKALVLDEIINYIQSLQ 202 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.29E-9	149	206	No hit	No description
SuperFamily	SSF47459	1.57E-17	149	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-18	151	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.643	151	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-8	155	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-10	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MDPPLINETS FSAANPSSYT LTEIWPFPPP PPSSTRLGLR MDNLADPDGS LEESTLTDQS 60 SGNGTRIRKT RDFSSEKDDS SKMVSTTTSA NDLNDSNGKR RKISGSRSEN NDSRAETEAS 120 SAANNKTAEQ SSKPSEPPKQ DYIHVRARRG QATDSHSLAE RARREKISER MNMLQDLVPG 180 CNKVIGKALV LDEIINYIQS LQCQVEFLSM KLEAVNSRMN TSPTTEHLHP KDLGAQPFVA 240 TGMISGPQPT REYVQGSQSE WLHMQVGGSF ERAT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.18933	0.0	bud

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.015G068100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002321546.2	0.0	transcription factor bHLH79 isoform X1
Swissprot	Q9LV17	4e-90	BH079_ARATH; Transcription factor bHLH79
TrEMBL	B9IEI7	0.0	B9IEI7_POPTR; Uncharacterized protein
STRING	POPTR_0015s07930.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	4e-89	bHLH family protein

Link Out ? help Back to Top
Phytozome	Potri.015G068100.1
Entrez Gene	7474855

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]