PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G067700.1 | ||||||||
Common Name | POPTR_0015s07900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 386aa MW: 42851.3 Da PI: 5.6541 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT++Ed +++ v+++G+g+W++++++ g+ R++k+c++rw +yl Potri.015G067700.1 14 RGLWTADEDAKILAHVAKHGTGNWTAVPKKAGLQRCGKSCRLRWTNYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.2 | 3.2e-12 | 68 | 109 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++T++E+e ++++++ G++ W+ Ia+ ++ gRt++++k+ w+ Potri.015G067700.1 68 DNFTPQEEEMIIRLHAAIGSR-WSIIAQQLP-GRTDNDVKNCWN 109 68*******************.*********.*********887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.868 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-11 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.11 | 66 | 116 | IPR017930 | Myb domain |
CDD | cd00167 | 6.11E-9 | 69 | 109 | No hit | No description |
Pfam | PF00249 | 5.8E-11 | 69 | 109 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MVRPPCCGKF NVKRGLWTAD EDAKILAHVA KHGTGNWTAV PKKAGLQRCG KSCRLRWTNY 60 LSPDLKHDNF TPQEEEMIIR LHAAIGSRWS IIAQQLPGRT DNDVKNCWNA RLRKKLSEMG 120 IDPVTHKPFS KILADYGNIG GLVKSGSRIG SLSRDLKNVF ALKPEQYNSI LPEGISNINS 180 HLMTRMVPRK MEPVQECFLN KFNNDSTNSN HSLDLLDQLQ AIKLVTEASS TCAEYQTMLV 240 PNYNILDEGS LSSSTCSTET QENLPTSFRW CDFLLEDQFL PSDPQAEQEN AAELSSKDLT 300 NQTQNVIVTS QGQNPNTMKP QCDQIIAEAS VGVNGVDLAV QNNSGFGDQV APSSSQHSSF 360 VETIIDGENK IFLDFPNLLE ELFNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G067700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002321544.1 | 0.0 | transcription factor MYB35 | ||||
TrEMBL | B9IEI5 | 0.0 | B9IEI5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s07900.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2942 | 34 | 74 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 2e-71 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G067700.1 |
Entrez Gene | 7462530 |