PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G064100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 629aa    MW: 67529.2 Da    PI: 6.6448
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G064100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.83.1e-30271330159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+
  Potri.015G064100.1 271 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSILTTTYEGTHNHP 330
                         58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-31256332IPR003657WRKY domain
SuperFamilySSF1182904.97E-27264332IPR003657WRKY domain
PROSITE profilePS5081127.875266332IPR003657WRKY domain
SMARTSM007744.5E-36271331IPR003657WRKY domain
PfamPF031061.2E-26272330IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MDAEDAMRRP RHEVVLKEDD RVDSSGDEGS CREEAAAAAA AVGSQRGCQE NDDRRSSSPQ  60
HRDSGKQVIV ATKNERITTE ADAKESSCQK EQDDQLESAR AEMGEVRKEN QRLKIHLDRV  120
VKDYRTLQVQ FYEIIQQEET KKSTDTVDDH QGTEEHELVS LTLGRISSEP KRDGKNNKTS  180
SQGKNHDEQV KESLSLGSLC TFEASKSATN ETLPNPSPVN SFGEPKEEAG ETWPPSKALK  240
TMRGGDDEVP QQNPAKKARV SVRARCDTPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA  300
PSCPVRKQVQ RCAEDMSILT TTYEGTHNHP LPISATAMAS TTSAAASMLL SGSSSSSAGT  360
AGFNNSGTIA VDLHGLNYYL SDNSKSKQFY LHNSSLSSSS PYPTITLDLT SNPSSASSHF  420
NRFTTSSYRP TIQKFASTSL NFGSSDSSNA MPWGNGFLTA SGQSHNRINQ LGTLNIGRPA  480
MDQSNIYDQF YTQNINDLAA ATSQQSLSAD TIAAATKAIT ADPSFQSALA AALTSIIGTG  540
TGSSATGVAN LGVVNNLFPK SERGPVINSF SSSPPNGNPC ASYFNKTTSS INSQPAPSSM  600
TMFVPPSLPF STPTNASASA VDKNDRAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-212713321777Probable WRKY transcription factor 4
2lex_A5e-212713321777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G064100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441832.10.0probable WRKY transcription factor 72
TrEMBLA0A2K1XJ020.0A0A2K1XJ02_POPTR; Uncharacterized protein
STRINGPOPTR_0015s07530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.16e-74WRKY DNA-binding protein 72