PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G058800.1
Common NamePOPTR_0015s06980g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 378aa    MW: 41290 Da    PI: 8.1175
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G058800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.42.3e-2953172389
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..... 88 
                         g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl + k  i++l+ ++ ++      ++    +++s+++     
  Potri.015G058800.1  53 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDATKNDIDKLPPLQMPPGFGQ-FHQPMLFSHQSNIAspffd 142
                         79*************************************************************77776222.2222222222233333444 PP

                 TCP  89 .............................k 89 
                                                      +
  Potri.015G058800.1 143 pnstfikdvgfhslgikigtstagldgqvQ 172
                         445556666666666654333333322221 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.8254112IPR017887Transcription factor TCP subgroup
PfamPF036347.4E-2754162IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MISNSRDMDL QGKQAGGGGS EGDKISKATP STSSRQWSAF RNPRIVRVSR SFGGKDRHSK  60
VCTVRGLRDR RIRLSVPTAI QLYDLQDRLG LSQPSKVIDW LLDATKNDID KLPPLQMPPG  120
FGQFHQPMLF SHQSNIASPF FDPNSTFIKD VGFHSLGIKI GTSTAGLDGQ VQNSSTTMPK  180
SSYNRDIEAS IRAKSKQVDT INEKGKWIKT NEDGEIGSYS TTGQVPAQNF FPLANHSSLP  240
SLLYNPTVPF NSNHWDASNL SLSTQFGGHG FLSQTENSLD TPSSLPLSSG SQLFFCPPPP  300
MPPLFPSYPP CVTTPSENES RDMNHFQLLS SSSSQHILPI SLTMSSTTKP FSLNLNPGLL  360
RSQNNNESNP DEDTTES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1859113155Putative transcription factor PCF6
5zkt_B1e-1859113155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G058800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2822580.0GU282258.1 Populus balsamifera isolate RNA13 haplotype A putative TCP family transcription factor gene, partial sequence.
GenBankGU2822590.0GU282259.1 Populus balsamifera isolate RNA13 haplotype B putative TCP family transcription factor gene, partial sequence.
GenBankGU2822600.0GU282260.1 Populus balsamifera isolate INU03 haplotype A putative TCP family transcription factor gene, partial sequence.
GenBankGU2822620.0GU282262.1 Populus balsamifera isolate NWL07 haplotype A putative TCP family transcription factor gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374413.20.0transcription factor TCP5
RefseqXP_024442288.10.0transcription factor TCP5
TrEMBLA0A2K1XIN30.0A0A2K1XIN3_POPTR; Uncharacterized protein
STRINGPOPTR_0015s06980.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.15e-54TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5