PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G054600.1
Common NamePOPTR_0015s06480g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 426aa    MW: 48250.1 Da    PI: 4.7406
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G054600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.82.6e-091659340
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        +r C+ + +k++++fC  ++ +lC+ C  + H+       H++v
  Potri.015G054600.1 16 ARACDSCLRKRARWFCVADDAFLCQACDASVHSAnqlasrHQRV 59
                        578*****************************667888888876 PP
2CCT70.25.3e-24373416144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea+++RYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Potri.015G054600.1 373 REARVMRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 416
                         9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.9641461IPR000315B-box-type zinc finger
SMARTSM003361.4E-121461IPR000315B-box-type zinc finger
PfamPF006431.1E-71659IPR000315B-box-type zinc finger
CDDcd000213.26E-111761No hitNo description
PROSITE profilePS5101716.112373415IPR010402CCT domain
PfamPF062031.7E-18373415IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010223Biological Processsecondary shoot formation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MISGRKAANA MGSKTARACD SCLRKRARWF CVADDAFLCQ ACDASVHSAN QLASRHQRVR  60
LETASSYRIS SSLNTDQDYS PPAWHQGFTR KARTPRHNSN KSLLVQQLLK DDREKVLNPL  120
PLVPEIGSEE EPNMAPDENE DDQLLCRVPV FDPFAAKMCD IVTSEDENMV VEVYGQEGAC  180
GLDNLPGFLP SDMDLAEFAA DVENLLGREA DEEYHDTKDL ELLDCSKGED EGQFCFADKV  240
VKMKDEQEME TIIDCHFDQD FNMARESLLG WNFDYETLVD GDEEVEEKKV PVPETEMMNS  300
TGYKEMKRNV SLRLDYESVI IAWANQGCPW TTGSRPELNP DDSWTDSMGA CPKDVNNPYG  360
GLGSHTRGGD GEREARVMRY KEKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRTSLMG  420
TTDFP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383399RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G054600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2130170.0AC213017.1 Populus trichocarpa clone POP051-F14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374368.20.0zinc finger protein CONSTANS-LIKE 6
TrEMBLA0A2K1XIE40.0A0A2K1XIE4_POPTR; Uncharacterized protein
STRINGPOPTR_0015s06480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.18e-89B-box type zinc finger protein with CCT domain