PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G054500.1 | ||||||||
Common Name | POPTR_0015s06470g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 322aa MW: 36395.9 Da PI: 4.4861 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45 | 2.8e-14 | 113 | 156 | 3 | 50 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaar 50 ykGVr+++ +g++ AeIrd + + r +lg++ taeeAa+a+ + + Potri.015G054500.1 113 YKGVRRRP-WGKYSAEIRDpF----LKIRLWLGTYTTAEEAAAAYKKKK 156 9*******.**********44....25******************8766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.60E-12 | 111 | 140 | No hit | No description |
SMART | SM00380 | 8.7E-15 | 112 | 178 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.4 | 112 | 172 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-7 | 112 | 153 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-15 | 112 | 162 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.7E-9 | 113 | 124 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-20 | 113 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-9 | 135 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MPGLQRPILD QDRIFDQEKQ KKPAMESNMK ASRKVRIICH DPEATDSSSD EDEEYFDRCN 60 RWKQFIREIT LPVFPSKSIL EGPSQDKTGV CKSNIIISNS LDNIRPRRSS AIYKGVRRRP 120 WGKYSAEIRD PFLKIRLWLG TYTTAEEAAA AYKKKKVEFD SKMALERANN LHVDTKVVSE 180 EFDGLCSHPS PLSVLDVSTM TSLGHGLESN VEMVAKECNM ESSIKEESCV EMIEDGSEEV 240 QCISDLWEER TLSPSVSQEL LGFDQQSEIG QFFDGFINGE GFSMRDNTEP VSSPMDGVMD 300 LPDIELETLA FVEETLNFAH Q* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 33 | KKPAMESNMKASRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G054500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213017 | 0.0 | AC213017.1 Populus trichocarpa clone POP051-F14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006374367.2 | 0.0 | ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | A0A2K1XID2 | 0.0 | A0A2K1XID2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s06470.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13451 | 20 | 27 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 3e-12 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G054500.1 |
Entrez Gene | 18105711 |