PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.015G048300.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 322aa MW: 35235.4 Da PI: 7.6157

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.015G048300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.6e-39	31	90	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s Potri.015G048300.1 31 NHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRS 90 57899****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	29	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-33	33	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.618	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MQDTHSIGGG GRLFSGGGGG DRRLRPHHHQ NHQALKCPRC DSLNTKFCYY NNYNLSQPRH 60 FCKSCRRYWT KGGVLRNVPV GGGCRKTKRS KLKQNTPSTT SDAITTSSTR PQELQEQHQR 120 RDHMSSNSHS SSESSSLTAT NNTNANTAVE AVSALSVNSV SNNLLNGIVE SKIFPRGDMN 180 PSFEPALLEQ GSDCGIFSEI GSFTSLITST NDLSFGFSNT TNQQQQQGLE HHVQNNQNQQ 240 QWQNQHQEMT GGGLIDQTIH AELSALPSSS RSTENTGGGF GALDWQLGSG DQAGGFFYLP 300 NTVDQAYWSQ SQWNDMTAYL P*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	9	17	GGRLFSGGG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.330	0.0	leaf

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.015G048300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF148034	0.0	EF148034.1 Populus trichocarpa clone WS0126_P16 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002322044.3	0.0	dof zinc finger protein DOF5.4
TrEMBL	A9PI21	0.0	A9PI21_POPTR; Uncharacterized protein
STRING	POPTR_0015s03520.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5998	30	50
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	5e-45	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Potri.015G048300.1

Publications ? help Back to Top
Ralph SG, et al. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. BMC Genomics, 2008. 9: p. 57 [PMID:18230180]