PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.015G046800.1

Common Name

POPTR_0015s03700g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 320aa MW: 36168.5 Da PI: 7.9689

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.015G046800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.4	7.7e-55	5	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL++kv++ +++ +++ +vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkd+e Potri.015G046800.1 5 LPPGFRFHPTDEELITCYLTRKVSDISFTS-KAVVDVDLNKCEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDRE 94 79***********************999.88***********988999********************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ g lvg+kktLvfykgrap+gek++Wvmheyrle Potri.015G046800.1 95 IFR-AGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLE 131 .999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-63	3	151	IPR003441	NAC domain
PROSITE profile	PS51005	59.819	5	151	IPR003441	NAC domain
Pfam	PF02365	2.4E-28	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MEESLPPGFR FHPTDEELIT CYLTRKVSDI SFTSKAVVDV DLNKCEPWDL PGKASMGEKE 60 WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDREIFRAGV LVGMKKTLVF YKGRAPRGEK 120 SNWVMHEYRL ENRHPFKSTK EEWVVCRIFQ KSTAVKKPQQ EPSSQQSLGS LCDTNSIVND 180 QYGDIELPNL NRIANSSSGF SNISAHTYNN ESNVNMNLNM NWAAAREAAH TTLPSLSWPP 240 GLLSSNLTTN SLLLKALQLR SYQQREATTT DYSFLTNGNI VHEFGTDLGS NFQASSSSKV 300 LDSVPQPQQE QPFNLDSIW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-57	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-57	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-57	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-57	4	157	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-57	4	157	19	174	NAC domain-containing protein 19
3swm_B	2e-57	4	157	19	174	NAC domain-containing protein 19
3swm_C	2e-57	4	157	19	174	NAC domain-containing protein 19
3swm_D	2e-57	4	157	19	174	NAC domain-containing protein 19
3swp_A	2e-57	4	157	19	174	NAC domain-containing protein 19
3swp_B	2e-57	4	157	19	174	NAC domain-containing protein 19
3swp_C	2e-57	4	157	19	174	NAC domain-containing protein 19
3swp_D	2e-57	4	157	19	174	NAC domain-containing protein 19
4dul_A	2e-57	4	157	16	171	NAC domain-containing protein 19
4dul_B	2e-57	4	157	16	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.015G046800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002321475.2	0.0	NAC domain-containing protein 92
TrEMBL	B9IE38	0.0	B9IE38_POPTR; Uncharacterized protein
STRING	POPTR_0015s03700.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4946	33	56
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-112	NAC domain containing protein 58

Link Out ? help Back to Top
Phytozome	Potri.015G046800.1
Entrez Gene	7453875