PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G046200.1
Common NamePOPTR_0015s03770g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 333aa    MW: 37741.5 Da    PI: 6.9493
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G046200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66.1e-182673148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd llv+++ ++G g+W++ a++ g++Rt+k+c++rw++yl
  Potri.015G046200.1 26 RGPWTLEEDTLLVHYIGRHGEGRWNLLAKRAGLRRTGKSCRLRWLNYL 73
                        89********************************************97 PP
2Myb_DNA-binding53.27e-1779122146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Potri.015G046200.1  79 RGNLTPQEQLLILDLHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 122
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.282173IPR017930Myb domain
SuperFamilySSF466891.91E-3024120IPR009057Homeodomain-like
SMARTSM007173.6E-152575IPR001005SANT/Myb domain
PfamPF002499.5E-172673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-222780IPR009057Homeodomain-like
CDDcd001671.04E-112873No hitNo description
PROSITE patternPS0017504150IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.14874128IPR017930Myb domain
SMARTSM007174.7E-1578126IPR001005SANT/Myb domain
PfamPF002491.8E-1579122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2381127IPR009057Homeodomain-like
CDDcd001671.20E-1183122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSEDIIMSSL KKSMTSSKED GSELRRGPWT LEEDTLLVHY IGRHGEGRWN LLAKRAGLRR  60
TGKSCRLRWL NYLKPDVKRG NLTPQEQLLI LDLHSKWGNR WSKIAQHLPG RTDNEIKNYW  120
RTRVQKQARH LKIDANSTAF QNIIRWFWMP RLLQKIGGSS TSSSAMPSQR PAVVSQPNLN  180
YAPQFSTFPP ALPPLVQQQE APLDMSVTMH YLEPHEQTSD SELGTSSCIS SAESMNVSQM  240
SQLSEYPTSP FQAIGNNSSE YSTLAKGCYY VDSNCYDMEA INLATMPVPG ELGISAGDRH  300
MEDGDWGAYD FGDTMWNMDE LWQFRNLQGK EN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25231274107B-MYB
1gv2_A2e-25231271104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G046200.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321477.20.0transcription factor MYB62
TrEMBLB9IE450.0B9IE45_POPTR; Uncharacterized protein
STRINGPOPTR_0015s03770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.19e-80myb domain protein 116