PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G041500.2 | ||||||||
Common Name | POPTR_0015s04260g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 1077aa MW: 120588 Da PI: 9.4901 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.8e-08 | 287 | 330 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT Ed+ l+ v++ G +W Ia +g++Rt+ qc sr+q Potri.015G041500.2 287 PWTIKEDKNLLLNVQEKGVTNWFDIAVSLGTNRTPSQCLSRFQR 330 8*****************************************96 PP | |||||||
2 | Myb_DNA-binding | 36.4 | 1.2e-11 | 339 | 384 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd +l av+ +G ++W ++a t+ gR + qc +rw k l Potri.015G041500.2 339 REWTKEEDAQLRIAVETYGERDWQSVACTLE-GRAGTQCSNRWKKTL 384 68*****************************.***********9975 PP | |||||||
3 | Myb_DNA-binding | 53.3 | 6.2e-17 | 392 | 436 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grWT +Ed++l+ avk++G++ W++Ia+ ++ gRt qc++rw + Potri.015G041500.2 392 GRWTLDEDKRLKVAVKLFGPKKWDKIAQFVP-GRTQVQCRERWVNC 436 8******************************.***********986 PP | |||||||
4 | Myb_DNA-binding | 46.5 | 8.6e-15 | 443 | 486 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+ WT+eEd++l+ a+++ G W+++a++++ Rt++qc rw Potri.015G041500.2 443 RDEWTEEEDLRLKAAIEECGYC-WSKVAERLP-QRTDNQCLRRWKV 486 789*****************99.*********.***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.935 | 181 | 279 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.3 | 185 | 281 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-7 | 188 | 204 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-7 | 252 | 292 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.26E-14 | 260 | 329 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.444 | 284 | 332 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3.5E-7 | 284 | 334 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.71E-6 | 287 | 332 | No hit | No description |
Pfam | PF13921 | 1.6E-10 | 288 | 349 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-11 | 293 | 340 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.31E-18 | 317 | 389 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.328 | 333 | 388 | IPR017930 | Myb domain |
SMART | SM00717 | 8.1E-9 | 337 | 386 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.86E-8 | 340 | 384 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-16 | 341 | 390 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.793 | 389 | 437 | IPR017930 | Myb domain |
SMART | SM00717 | 5.3E-15 | 390 | 439 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.99E-27 | 391 | 484 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.1E-21 | 392 | 442 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-15 | 392 | 436 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.49E-13 | 393 | 435 | No hit | No description |
PROSITE profile | PS51294 | 23.606 | 438 | 492 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-13 | 442 | 490 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-13 | 443 | 486 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-18 | 443 | 487 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.99E-11 | 445 | 488 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1077 aa Download sequence Send to blast |
MEKSEVGVSD NSLAERNTAC EVLPVTEQDD NAANLLGDNV EIGNSASAEE NELDSGRLST 60 LELDYSSFPK SAQVFIDAIK RNRSCQKFIQ NKLIQIEARI EENNKLKDKV KILKDFQFSC 120 RKITGMALSL RKDPRIQLVS ARKTSNSKHP KVNGKKVSPL QDGPVENSHV ANYRTALTNF 180 PLSLNRKKWT ETEKENLGKG IRQQFQEMML QFSMDQFSSE GSPEDGKNLD SILVSIRDLE 240 ITPEKIREFL PRVNWDQLAS SYVAGRSGAE CEARWLNFED LLINQSPWTI KEDKNLLLNV 300 QEKGVTNWFD IAVSLGTNRT PSQCLSRFQR SLNARILKRE WTKEEDAQLR IAVETYGERD 360 WQSVACTLEG RAGTQCSNRW KKTLHPAIRR VGRWTLDEDK RLKVAVKLFG PKKWDKIAQF 420 VPGRTQVQCR ERWVNCLDPS MNRDEWTEEE DLRLKAAIEE CGYCWSKVAE RLPQRTDNQC 480 LRRWKVLVPH EVPLLQAARR MQKAALISNF VDRESERPAL GPNDFVPLAI TGPVSDPEKM 540 DQSRKRKRKL RREESQMEKV AAPGNASKKI RSNRSRKKVQ ISSKEVPEIP DGTQVGNLGG 600 SRSVVTETTM EYCSENNRHA ERGQDHPSSN SNLTPLMTTS FQGVDSGQNQ QLPDLHPKGR 660 KPVDRDGNSK SLLLSPPENL DAGIINGDVS QTFHPNSTTS SKKRRAYKQH SRKNICAKSS 720 EGSSVLSETT IDASALVNDY LDSNLVTTNE EDNILGQRDA PGKKRVPKLH SESSEWTGSL 780 DCLLPPHENS ELRVTSTEIM NKSSLFGTPT NEKRKAFKLP CRRKIRNEEP SRKDQCFAAV 840 PCQQDTSKKS KARGKSCSKK VLETKNEDDV VLASFLRDKS KKKRLKVAQN ADQACSSSSM 900 ITRPEVLSRV DQPSNGNKLS SAVRNSEGQT CSHGRSSENG LSCDMYAHQS NHMQTERCEL 960 DVNNRGIFAP MEGVREPGSI DQEAVLEPGD ISPAGSGSRV NTHSHSRKGP QLHSKGAEQP 1020 RNDTGPDKLS CSVKNSIGSS SKPTIIGNDI EPGGRSSHSP SASGEALKYY KRRSKR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-31 | 257 | 484 | 4 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-31 | 257 | 484 | 4 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 543 | 548 | RKRKRK |
2 | 543 | 551 | RKRKRKLRR |
3 | 545 | 552 | RKRKLRRE |
4 | 1066 | 1072 | LKYYKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G041500.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322121.3 | 0.0 | uncharacterized protein LOC7462515 isoform X2 | ||||
TrEMBL | A0A2K1XHS8 | 0.0 | A0A2K1XHS8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s04260.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 0.0 | myb domain protein 4r1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G041500.2 |
Entrez Gene | 7462515 |