PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G034500.1
Common NamePOPTR_0015s05030g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-X1
Protein Properties Length: 1077aa    MW: 116400 Da    PI: 8.1427
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G034500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.54.3e-06292308319
            zf-NF-X1   3 kHkCqklCHeGpCppCp 19 
                         +H+C+++CH GpC++C+
  Potri.015G034500.1 292 RHRCERICHVGPCDSCQ 308
                         7***************6 PP
2zf-NF-X1186.4e-06412429118
            zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                         CG+H+C+  CH G+C pC
  Potri.015G034500.1 412 CGMHQCKGVCHSGDCAPC 429
                         ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578509.89E-6113184No hitNo description
PROSITE profilePS500168.6120181IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.376123179IPR001841Zinc finger, RING-type
PROSITE patternPS013590123178IPR019786Zinc finger, PHD-type, conserved site
CDDcd060089.70E-6212273No hitNo description
SMARTSM004380.039235253IPR000967Zinc finger, NF-X1-type
PfamPF014221.8237252IPR000967Zinc finger, NF-X1-type
CDDcd060088.54E-11280328No hitNo description
SMARTSM004380.0015290309IPR000967Zinc finger, NF-X1-type
PfamPF014223.5E-4292307IPR000967Zinc finger, NF-X1-type
CDDcd060083.29E-9344387No hitNo description
PfamPF014220.0021354371IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0035354373IPR000967Zinc finger, NF-X1-type
CDDcd060081.50E-12402450No hitNo description
PfamPF014226.9E-5412429IPR000967Zinc finger, NF-X1-type
SMARTSM004388.2E-4412431IPR000967Zinc finger, NF-X1-type
PfamPF0142218470481IPR000967Zinc finger, NF-X1-type
SMARTSM00438180470504IPR000967Zinc finger, NF-X1-type
CDDcd060082.00E-4524572No hitNo description
PfamPF0142221534550IPR000967Zinc finger, NF-X1-type
SMARTSM004380.063534552IPR000967Zinc finger, NF-X1-type
PfamPF014220.18587602IPR000967Zinc finger, NF-X1-type
SMARTSM004380.96587617IPR000967Zinc finger, NF-X1-type
CDDcd060083.94E-5615664No hitNo description
SMARTSM004380.21626647IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3306.4E-5863914IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1077 aa     Download sequence    Send to blast
MSFQPRNDRR DNNNNRSSRF PTQKWVPRGA NSSPAVDANT KPPSSSNSRC NGNGGGGAAH  60
GWSGTAHHRY NKGGMAVNAP RGLVGRPRKG IERSEKTREL NDPNLPQLAQ DIQEKLVKST  120
VECMICYDMV RRSVPIWSCS SCFSIFHLNC IKKWARAPTS VDLIAEKNQG FNWRCPGCQS  180
VQLTTLNDIR YVCFCGKRRD PPSDLYLTPH SCGEPCGKPL EKEAPGADGS KEDLCPHNCV  240
LQCHPGPCPP CKAFAPPRLC PCGKKIITTR CADRMSVVTC GHPCDKLLEC WRHRCERICH  300
VGPCDSCQVL VNASCFCKKK TEVVLCGDMA VKGEVKAEDG VFSCNSTCGK MLGCGNHMCD  360
ETCHPGLCGD CELMPARVRS CYCGKTSLQE ERKSCLDPIP TCTQICGKSL PCGMHQCKGV  420
CHSGDCAPCL VSVTQKCRCG STSQIVECYK ITSENEKFLC EKPCGRKKNC GRHRCSERCC  480
PLSNINNQFS GDWDPHFCQM ACGKKLRRTS IPPPLPCGTP PPSCQLPCSV PQPCGHPASH  540
SCHFGDCPSC LVPVAKECVG GHVILGNIPC GSRDIRCNKL CGKTRQCGLH ACGRTCHSLP  600
CDTSSGNETG TRASCGQTCG APKRDCRHTC TALCHPHAPC PDVRCEFLVT ISCSCGRMTA  660
SVPCDAGGSN GAYNDTVLEA SILHKLPASL QPVESTGKKI PLGQRKLMCD DECAKLERKR  720
VLADAFDITP PNLEALHFGE NSAVTELIGD LYRRDPKWVL AVEERCKYLV LGKSRGTTSG  780
LKIHVFCPML KDKRDAVSLI AERWKLAIYS AGWEPKRFFV VHATSKSKPP PRVIGIKGTT  840
TLSSHPPVFD VLVDMDPRLV VSFLDLPREA DISSLVLRFG GECELVWLND KNALAVFNDP  900
ARAATAMRRL DHGSLYHGAS VVPQNTGASV ASPANNAWAV AGTAMEGTVA ALKGTSWKKA  960
VVQETGCKKY SWSGEEWSDG GSADVQASAW KGKEAPIVAS INRWSVLDSE KADSSSAASV  1020
KMEDPAKQVA GSLSSSGLES NASTSSASRQ PAMQSGGVSR EEDLSVVVDD WEKAYD*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G034500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2168360.0AC216836.1 Populus trichocarpa clone POP013-I22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321572.30.0NF-X1-type zinc finger protein NFXL1
RefseqXP_024442669.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A3N7G0180.0A0A3N7G018_POPTR; Uncharacterized protein
STRINGPOPTR_0015s05030.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Representative plantOGRP39501420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1