PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.015G032900.1

Common Name

POPTR_0015s05200g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

BBR-BPC

Protein Properties

Length: 289aa MW: 32087.1 Da PI: 9.732

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.015G032900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	316.2	1e-96	5	288	1	301
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlms.siaerdakirernlalsekkaavaerd.........maflqrdkalaernkalverdnk 80 md+d+s + rn+gyyep+ +k nlglqlms +++e+ + + +++ +a +++rd m++ +d+++ + ++k Potri.015G032900.1 5 MDEDNSLNiRNWGYYEPT-PVKGNLGLQLMSpTMPEKPILGSRSPAIMTSMNAGFYHRDigisqplmpMEY-VKDAWIGQ--------REK 85 99*************9.99*****945667766554445559999999*777777777777.66777776........899 PP GAGA_bind 81 llalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekk.kkkkrqrakkpkekkakkkkkk 170 ll++l+ ++ + v ++t+s +++++ ++++ +++ e l+++e+a ++++++ +kkrqr+k pk+++akk Potri.015G032900.1 86 LLNVLPGNHD-------YAAVWPETSSSHHMEM------FQPPYSTKD----EPLELVEEAGVVEKVNvPNKKRQRHKGPKSPRAKKGMGG 159 **8875.......77899***9999......334444322....233444444444444404566889999***99999 PP GAGA_bind 171 sekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmS 261 +++k + ++++ +r++a kk+ ++ +ng+++D+s +P+PvCsCtG ++qCY+WG+GGWqSaCCtt iSvyPLP+stkrrgaRiagrKmS Potri.015G032900.1 160 AQVPKPEGSPPT--QRARAAKKTAEIMINGINMDISVIPIPVCSCTGNPQQCYRWGCGGWQSACCTTCISVYPLPMSTKRRGARIAGRKMS 248 999988888888..79*********************************************************************** PP GAGA_bind 262 qgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 gafkk+LekLa+eGyd+snp+DL++hWAkHGtnkfvtir Potri.015G032900.1 249 LGAFKKVLEKLAGEGYDFSNPIDLRTHWAKHGTNKFVTIR 288 *************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	3.3E-111	5	288	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	1.6E-191	5	288	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MFEIMDEDNS LNIRNWGYYE PTPVKGNLGL QLMSPTMPEK PILGSRSPAI MTSMNAGFYH 60 RDIGISQPLM PMEYVKDAWI GQREKLLNVL PGNHDYAAVW PETSSSHHME MFQPPYSTKD 120 EPLELVEEAG VVEKVNVPNK KRQRHKGPKS PRAKKGMGGA QVPKPEGSPP TQRARAAKKT 180 AEIMINGINM DISVIPIPVC SCTGNPQQCY RWGCGGWQSA CCTTCISVYP LPMSTKRRGA 240 RIAGRKMSLG AFKKVLEKLA GEGYDFSNPI DLRTHWAKHG TNKFVTIR*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in pollen grains, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:21435046}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.015G032900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ982266	0.0	FJ982266.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC8) gene, complete cds.
GenBank	FJ982267	0.0	FJ982267.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC8) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006374225.1	0.0	protein BASIC PENTACYSTEINE2
Refseq	XP_006374226.1	0.0	protein BASIC PENTACYSTEINE2
Swissprot	Q9LDE2	4e-85	BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBL	U5FRS0	0.0	U5FRS0_POPTR; Uncharacterized protein
STRING	POPTR_0015s05200.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2370	32	83
Representative plant	OGRP1865	12	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	2e-87	basic pentacysteine 2

Link Out ? help Back to Top
Phytozome	Potri.015G032900.1
Entrez Gene	18105583

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Simonini S,Kater MM Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. J. Exp. Bot., 2014. 65(6): p. 1455-65 [PMID:24482368]