PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.015G032800.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

BBR-BPC

Protein Properties

Length: 285aa MW: 31633.6 Da PI: 10.1861

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.015G032800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	318.7	1.8e-97	1	284	1	301
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlms.siaerdakirernlalsekkaavaerd.........maflqrdkalaernkalverdnk 80 md+d+s + rn+gyyep+ +k nlglqlms +++e+ + + +++ ++ ++++d m++ +r +++ + ++k Potri.015G032800.1 1 MDEDNSLNiRNWGYYEPT-PVKGNLGLQLMSpTMPEKPFLGSRSAAIMTSMNGGFNHKDvgvsqpmhpMEY-MRGAWIGQ--------REK 81 99*************9.99*****945667776655555558999999*666666666666.55666665........899 PP GAGA_bind 81 llalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkks 171 ++++l+ +++ + v ++t+s++++q ++++ +++e + +eea ++k + +kkrqr+k pk++kakk k+ + Potri.015G032800.1 82 FINVLPGNHN-------YAAVFPETSSAHHMQV------FQPPYSTKDEP---LELVEEAGVVEKVNGPNKKRQRQKAPKSPKAKKGKRGP 156 **8886.......78899***9999......34455533322...233445555556667788899***********99 PP GAGA_bind 172 ekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSq 262 +++k + + + +r+++ kk+ ++ +ng+++D+s +P+PvCsCtG ++qCY+WG+GGWqSaCCtt iSvyPLP+s krrgaRiagrKmS Potri.015G032800.1 157 QVPKPEDTLSV--QRVRSAKKTAEIMINGINMDISVIPIPVCSCTGNPQQCYRWGCGGWQSACCTTCISVYPLPMSMKRRGARIAGRKMSL 245 88877766666..79************************************************************************ PP GAGA_bind 263 gafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 gafkk+LekLa+eGyd+snp+DL++hWAkHGtnkfvtir Potri.015G032800.1 246 GAFKKVLEKLAGEGYDFSNPIDLRTHWAKHGTNKFVTIR 284 ************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.1E-189	1	284	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.8E-112	1	284	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MDEDNSLNIR NWGYYEPTPV KGNLGLQLMS PTMPEKPFLG SRSAAIMTSM NGGFNHKDVG 60 VSQPMHPMEY MRGAWIGQRE KFINVLPGNH NYAAVFPETS SAHHMQVFQP PYSTKDEPLE 120 LVEEAGVVEK VNGPNKKRQR QKAPKSPKAK KGKRGPQVPK PEDTLSVQRV RSAKKTAEIM 180 INGINMDISV IPIPVCSCTG NPQQCYRWGC GGWQSACCTT CISVYPLPMS MKRRGARIAG 240 RKMSLGAFKK VLEKLAGEGY DFSNPIDLRT HWAKHGTNKF VTIR*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in pollen grains, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:21435046}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.015G032800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ982268	0.0	FJ982268.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC9) gene, complete cds.
GenBank	FJ982269	0.0	FJ982269.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC9) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024441848.1	0.0	protein BASIC PENTACYSTEINE2
Refseq	XP_024441849.1	0.0	protein BASIC PENTACYSTEINE2
Swissprot	Q9LDE2	3e-89	BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBL	H1ZN52	0.0	H1ZN52_POPTR; BBR-BPC family protein
STRING	POPTR_0015s05200.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2370	32	83
Representative plant	OGRP1865	12	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	5e-91	basic pentacysteine 2

Link Out ? help Back to Top
Phytozome	Potri.015G032800.1

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Simonini S,Kater MM Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. J. Exp. Bot., 2014. 65(6): p. 1455-65 [PMID:24482368]