PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.015G030200.2

Common Name

POPTR_0015s05450g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 242aa MW: 27831 Da PI: 4.5779

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.015G030200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.6	7e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd Potri.015G030200.2 6 LPPGFRFHPTDEELVNYYLKRKINGQEIEL-DIIPEVDLYKCEPWELAeKsFFPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKD 95 79**************************.99**********84335566888***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v + +++++g+kktLv+y+grap+g +tdWvmheyrl Potri.015G030200.2 96 RRVNC-QNRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 133 *.8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.68E-64	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	59.873	6	156	IPR003441	NAC domain
Pfam	PF02365	3.3E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MSPVGLPPGF RFHPTDEELV NYYLKRKING QEIELDIIPE VDLYKCEPWE LAEKSFFPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVNC QNRAIGMKKT LVYYRGRAPQ 120 GIRTDWVMHE YRLDDKECED TSGIQDSYAL CRVFKKNGIC SEIEEQGQCT STSLSLMESS 180 PQGVINEYET MSPDVPIASS SCVEEEDKDD SWMQFITDEP WCSSNNAMVG GEEISHSTFT 240 D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-56	4	157	13	169	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269\|PubMed:25081480}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.015G030200.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006374257.1	0.0	NAC domain-containing protein 86 isoform X2
Swissprot	Q9FFI5	1e-90	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	U5FPE3	0.0	U5FPE3_POPTR; Uncharacterized protein
STRING	POPTR_0015s05450.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-136	NAC domain containing protein 57

Link Out ? help Back to Top
Phytozome	Potri.015G030200.2
Entrez Gene	18105609

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]