PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G016700.1 | ||||||||
Common Name | POPTR_0492s00200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 120aa MW: 13525.1 Da PI: 11.7498 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.9 | 2.1e-14 | 12 | 88 | 11 | 84 |
HHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE CS B3 11 lksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkl 84 +++rl++p +f+++ g +t +de+g+ W +++++rk++ vl++GW Fv++++L++gD v F Potri.015G016700.1 12 DTTKRLSVPIRFLRSLppfklG---SHAVTFEATDEKGEAWAFQCSIRKRGHPkPVLQRGWVAFVRSKKLQVGDKVRFIK 88 34567*********99998532...2457888999**********8855554469*********************9983 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.629 | 2 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-17 | 4 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.8E-4 | 4 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.64E-16 | 6 | 86 | No hit | No description |
SuperFamily | SSF101936 | 2.94E-13 | 6 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.8E-12 | 11 | 89 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MAQVSKILKK IDTTKRLSVP IRFLRSLPPF KLGSHAVTFE ATDEKGEAWA FQCSIRKRGH 60 PKPVLQRGWV AFVRSKKLQV GDKVRFIKHK NRATAAISYK VRAEKAIKIF GATFGYARI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G016700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213428 | 1e-153 | AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011008416.1 | 2e-73 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | U7DXJ1 | 9e-81 | U7DXJ1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0492s00200.1 | 1e-81 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34390.1 | 3e-08 | auxin response factor 22 |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G016700.1 |
Entrez Gene | 18109611 |