PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G016100.1
Common NamePOPTR_0015s01830g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 120aa    MW: 13704.3 Da    PI: 10.9511
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G016100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.1e-184102197
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr. 87 
                         f k+lt+ d+ k  rl++p kf+++    k+   ++ + +de+g++W+++++ rkk++    vl+kGW  F++ ++Lk+gD +vF+  ++ 
  Potri.015G016100.1   4 FSKILTKTDAEK--RLSVPIKFLKSLpPFKSGHAVDFQAKDERGKVWTFQCSTRKKGRYkkPVLSKGWLAFANKKKLKVGDKIVFYKGRHq 92 
                         678886666555..69*******999*445567899***************87666555779************************66555 PP

                         SEE..EEEEE CS
                  B3  88 sefelvvkvf 97 
                         ++++++ +v+
  Potri.015G016100.1  93 ETEKPFYGVR 102
                         7777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.8272105IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-16392IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-21393IPR015300DNA-binding pseudobarrel domain
CDDcd100172.85E-20387No hitNo description
SMARTSM010192.1E-114104IPR003340B3 DNA binding domain
PfamPF023621.3E-154102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MAIFSKILTK TDAEKRLSVP IKFLKSLPPF KSGHAVDFQA KDERGKVWTF QCSTRKKGRY  60
KKPVLSKGWL AFANKKKLKV GDKIVFYKGR HQETEKPFYG VRVEREIKIL GAVIGYMNP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15478RKKGRYKKPVLSKGWLAFANKKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G016100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134280.0AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321429.19e-83B3 domain-containing transcription factor NGA4
TrEMBLB9IDU12e-81B9IDU1_POPTR; Uncharacterized protein
STRINGPOPTR_0015s01830.14e-82(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.18e-11B3 family protein