PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G015200.1
Common NamePOPTR_0015s01750g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 85aa    MW: 9337.96 Da    PI: 11.8007
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G015200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.81.6e-12583279
                        EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-E CS
                  B3  2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDf 79
                         kvl +  +  ++rl++p  f+++     gg     ++ +  d sgr+W +++++rkk+    v++kGW  Fv+++ Lk+gD 
  Potri.015G015200.1  5 SKVLRK--TDIKKRLSVPTGFLSSLpsfnGGG--HAVDFQAVDGSGRVWAFRCSIRKKGHPkPVISKGWLAFVHSKSLKVGDK 83
                        566633..333457********9999987444..457899999**********886665546********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.305285IPR003340B3 DNA binding domain
CDDcd100172.73E-16384No hitNo description
Gene3DG3DSA:2.40.330.102.1E-15484IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-13484IPR015300DNA-binding pseudobarrel domain
PfamPF023626.6E-10583IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MARFSKVLRK TDIKKRLSVP TGFLSSLPSF NGGGHAVDFQ AVDGSGRVWA FRCSIRKKGH  60
PKPVISKGWL AFVHSKSLKV GDKVQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G015200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134281e-127AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006364.12e-52PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A2K1XGJ06e-54A0A2K1XGJ0_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0015s01750.13e-55(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.13e-07B3 family protein