PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G007000.1 | ||||||||
Common Name | POPTR_0015s00940g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 153aa MW: 16837.7 Da PI: 4.0667 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89.4 | 6.3e-28 | 10 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgk. 88 +p G+rF+P+d++l+v+yLkkk+ g++l++ +vi+++d+y + P +Lp +k++ ew+fFs+r++ + t++gy + Potri.015G007000.1 10 VPTGYRFSPNDDDLIVHYLKKKILGQQLPA-DVIPTTDVYASSPDKLPlDDFKGGVAnEWFFFSTRSEDA-----DIILTENGYYAVDPEg 94 589***************************.99***************7666665444*******98864.....4568999**9966552 PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ k++ vg ktL+fy+g+ p+g++tdW+++e+++ Potri.015G007000.1 95 TAPIAW-KDKIVGYAKTLTFYQGSPPNGSETDWMVEEFSV 133 677777.8999***************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-30 | 5 | 136 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.229 | 10 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-16 | 11 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MASGAQATNV PTGYRFSPND DDLIVHYLKK KILGQQLPAD VIPTTDVYAS SPDKLPLDDF 60 KGGVANEWFF FSTRSEDADI ILTENGYYAV DPEGTAPIAW KDKIVGYAKT LTFYQGSPPN 120 GSETDWMVEE FSVNAEFVPI NKDDLSTQEK VM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-22 | 9 | 133 | 14 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G007000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209184 | 9e-48 | AC209184.1 Populus trichocarpa clone POP031-J16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002321971.2 | 1e-107 | NAC domain-containing protein 41 | ||||
TrEMBL | A0A3N7HSH0 | 1e-106 | A0A3N7HSH0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s00940.1 | 1e-106 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14452 | 7 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 3e-26 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G007000.1 |
Entrez Gene | 7475154 |