PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G006200.4
Common NamePOPTR_0015s00860g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRF
Protein Properties Length: 436aa    MW: 47589 Da    PI: 8.399
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G006200.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.92.1e-2482124244
                 WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          epgrCrRtDGKkWRCsr+v ++kk+CErH+hrgr rsrk++e
  Potri.015G006200.4  82 LEPGRCRRTDGKKWRCSRDVAPDKKYCERHMHRGRPRSRKHVE 124
                         69***************************************97 PP
2QLQ49.41.4e-173264234
                 QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34
                        +FT+aQ+++L++Q+++yKy++++  vPp+Ll +
  Potri.015G006200.4 32 PFTNAQWNELERQAMIYKYMVSSNHVPPHLLIP 64
                        8*****************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.6E-113167IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.0E-123264IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.5853267IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.5581125IPR014977WRC domain
PfamPF088793.9E-2083124IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MSKSQVWCGL TNTVIFFLPS SGGNMAASLG FPFTNAQWNE LERQAMIYKY MVSSNHVPPH  60
LLIPTPLMGN GLDVRFTKRA DLEPGRCRRT DGKKWRCSRD VAPDKKYCER HMHRGRPRSR  120
KHVELNTSSN SNSNKKSRHN PSICTESPVT VAISNPTINN NNSSSASHDH FVGTMPQPYI  180
QTPVFVNKTS EKIATFDANG AFGSTYKEPR SFDWMLKGGT GPIVTNDQQW PHLVHTEIGL  240
ATEGSFNNAS VLKQHYREES LNLNSYGNLN AREDQHRSQY SLFLDGAPRS YIDAWSNDAN  300
SGNTSSVSSD GKLPLSPLSL SMGGNRSVDD EMGQIQMGLG LIKPDQNQEC GGDTSSTPGG  360
PLAEVLQLRT VNINTGTNQS SSVIENGDSI CPPATRVSSP SEVLQKTHAS LSDSSGNRVQ  420
HLPVQGPNLK LPCFG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G006200.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321965.20.0growth-regulating factor 4
TrEMBLA0A2K1XFZ80.0A0A2K1XFZ8_POPTR; Uncharacterized protein
STRINGPOPTR_0015s00860.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.18e-36growth-regulating factor 7