PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G004100.1 | ||||||||
Common Name | POPTR_0015s00640g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 589aa MW: 65086.3 Da PI: 4.699 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.5 | 4.5e-52 | 11 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp GfrF+P+d+elv++yL+ k++g++ + +vi+e+d++k+ePwdLp + +k+++ ew+fF++ d+ky++g+r+nrat++gyWkatg+d Potri.015G004100.1 11 LPLGFRFRPSDKELVDYYLRLKINGDDDGV-KVIREIDVCKWEPWDLPdlSIIKNKDPEWFFFCPLDRKYPNGSRQNRATNAGYWKATGND 100 699************************888.99**************96447778888********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++s +++l+g+kktLvfy+grapkg++t+Wvmheyr+ Potri.015G004100.1 101 RKIKS-GNNLIGMKKTLVFYTGRAPKGKRTNWVMHEYRA 138 *****.999****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-59 | 4 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.318 | 11 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-27 | 12 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0070417 | Biological Process | cellular response to cold | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 589 aa Download sequence Send to blast |
MAVLSMNFNS LPLGFRFRPS DKELVDYYLR LKINGDDDGV KVIREIDVCK WEPWDLPDLS 60 IIKNKDPEWF FFCPLDRKYP NGSRQNRATN AGYWKATGND RKIKSGNNLI GMKKTLVFYT 120 GRAPKGKRTN WVMHEYRATE EELDGTKPGQ SSFVLSRLFK KQDESIESLN CDEAEATVSS 180 PTMVQSSPEV TQSDQPLIEA SPANTTSEVG APVEFQSNNF GVCDGGGQSV GLGASEGDLP 240 VEEALNWFID SPPEPLDYKI FSPLHVQVQS AMGSSSMFYP GNNELSASNT GLQFNNGANE 300 TDADTSDFVD SILQQPVEFS HGESSIQNIS TIPHESLKSV VFVKDSGSYS GSDVDLATIR 360 IQQEFQGADL LEGNVDQKPS SSLFSVSNAH QQQINLGLLQ NEPYEQKSLA SISATDQFNN 420 LNKGSSNTNQ VGGSDIDWDG IRIRPRNPRR NQQFDRNLNM QGDASRRFLL QSKLQAHFST 480 KSGDLSSEEV ESECIVTKEA KVTEMETPVC GGDNGIDEQH KSSLVEVGES LIDTKNNCSI 540 LSKVSSMFSK ASCARNSFWP NTMFRVAVFA VLFAVVVSRW RHFILNTA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-47 | 10 | 165 | 19 | 172 | NAC domain-containing protein 19 |
3swm_B | 2e-47 | 10 | 165 | 19 | 172 | NAC domain-containing protein 19 |
3swm_C | 2e-47 | 10 | 165 | 19 | 172 | NAC domain-containing protein 19 |
3swm_D | 2e-47 | 10 | 165 | 19 | 172 | NAC domain-containing protein 19 |
3swp_A | 2e-47 | 10 | 165 | 19 | 172 | NAC domain-containing protein 19 |
3swp_B | 2e-47 | 10 | 165 | 19 | 172 | NAC domain-containing protein 19 |
3swp_C | 2e-47 | 10 | 165 | 19 | 172 | NAC domain-containing protein 19 |
3swp_D | 2e-47 | 10 | 165 | 19 | 172 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves and stems. {ECO:0000269|PubMed:17158162}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00398 | DAP | Transfer from AT3G49530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G004100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002321956.3 | 0.0 | NAC domain-containing protein 62 isoform X2 | ||||
Swissprot | Q9SCK6 | 8e-98 | NAC62_ARATH; NAC domain-containing protein 62 | ||||
TrEMBL | A0A2K1XFV3 | 0.0 | A0A2K1XFV3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s00640.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5551 | 33 | 53 | Representative plant | OGRP9409 | 6 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49530.1 | 1e-100 | NAC domain containing protein 62 |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G004100.1 |
Entrez Gene | 7464501 |
Publications ? help Back to Top | |||
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