PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G180600.1
Common NamePOPTR_0014s17900g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 520aa    MW: 55369.6 Da    PI: 8.6244
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G180600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-0585107123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Potri.014G180600.1  85 FVCEICNKGFQRDQNLQLHRRGH 107
                         89*******************88 PP
2zf-C2H215.74.3e-05161183123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC+ C+k +  +s+ k H++t+
  Potri.014G180600.1 161 WKCERCSKKYAVQSDWKAHMKTC 183
                         58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-584107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.15E-884107No hitNo description
PfamPF121718.3E-585107IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01785107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94985107IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SMARTSM00355100126156IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-5149182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.15E-8156182No hitNo description
SMARTSM0035577161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MVSFEQDKAE VLEGKRMVDV ENSLRMKVST ASGEDTIVSS FGNQDMPLSV AVPQPKKKRN  60
LPGMPDPDAE VVALSPKSLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTNKE  120
PRKRVYVCPE PSCVHHNPVR ALGDLTGIKK HFSRKHGEKK WKCERCSKKY AVQSDWKAHM  180
KTCGTREYKC DCGTLFSRRD SLITHRAFCD ALTEESARAQ TLATTGNEGN GCNVKCVVAS  240
PPPPPLTPST SVVSPGLSVQ SSELAENPIG LSPPTPAAIC LNASATSTSS TSSTSNVFAS  300
IFASSTASPA AIPQLASPSA FPMFCGLARS DCPPTMPTPR AMDPPSLSLS PSVYLSNTTS  360
SLFPTDQDRR HYTPSPQPAM SATALLQKAA QMGATTSNPS FLRGLGFPPS TNQDGNGNQW  420
DMKPENNTTF AAGLGLVLPT SDVMMDSSSL FGNKPTTLDL LGLGLDAASS ALLNYNGTGG  480
FNVGAAAAAA YGGGRRGNCE ETWDGVPERK PNGSTATSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-36157223369Zinc finger protein JACKDAW
5b3h_F1e-36157223369Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G180600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1935782e-98AB193578.1 Salix hukaoana DNA, microsatellite, clone:Shuk197.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320649.20.0protein indeterminate-domain 2
SwissprotQ9LVQ71e-141IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLB9IBT20.0B9IBT2_POPTR; Uncharacterized protein
STRINGPOPTR_0014s17900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-124indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]