PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G170600.3
Common NamePOPTR_0014s16870g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 380aa    MW: 41627.3 Da    PI: 5.1713
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G170600.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.7e-06444539
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        +C+ ++e++   +C+++   lC +C  + H+       H++
  Potri.014G170600.3  4 VCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalskrHSR 44
                        6*****************************65677777765 PP
2zf-B_box22.13.2e-074689441
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                          C++++++++   C + +  lC++C   +H g       H++++
  Potri.014G170600.3 46 LLCERCNSQPALVRCAEERISLCQNCDWIGH-GtstsastHRRQT 89
                        57**************************99*.5477888887765 PP
3CCT63.28e-22322365144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R  a++RYkeK+ktR FeKk+rY+sRKa+A+ R RvKGrFvk+ 
  Potri.014G170600.3 322 RSDAVMRYKEKKKTRMFEKKVRYASRKARADVRRRVKGRFVKAG 365
                         889**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.812147IPR000315B-box-type zinc finger
SMARTSM003361.1E-8447IPR000315B-box-type zinc finger
CDDcd000218.74E-8447No hitNo description
PROSITE profilePS501198.8594390IPR000315B-box-type zinc finger
CDDcd000211.08E-54790No hitNo description
SMARTSM003363.44890IPR000315B-box-type zinc finger
PfamPF062034.2E-17322364IPR010402CCT domain
PROSITE profilePS5101715.229322364IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGYVCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSK RHSRTLLCER CNSQPALVRC  60
AEERISLCQN CDWIGHGTST SASTHRRQTI NSYSGCPSAS ELSSIWSFVL DFPSRGESTC  120
EQELGLMSIA ENSTTDSWGP TENTIGQNAS GVVEVNDRRE IAKSGVWLGS SSIPESSSVP  180
NNLDQTTRSA NTSLPKDFNM DEMDLSLENY EELFGVTLNN SEELLENGGI DSLFGTKDMS  240
VVNAVQPASS NAASADSMMS NKTEPILCFT EKQGHSSLSF SGLNVESSAA DYQDCGASSM  300
LLMGEPPWCP PCPESPFSSA NRSDAVMRYK EKKKTRMFEK KVRYASRKAR ADVRRRVKGR  360
FVKAGEAYDY DPLSQTRSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G170600.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2149950.0AC214995.1 Populus trichocarpa clone POP004-B08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441090.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-155COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2K1XX940.0A0A2K1XX94_POPTR; Uncharacterized protein
STRINGPOPTR_0014s16870.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-117B-box type zinc finger protein with CCT domain