PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G170600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | CO-like | ||||||||
Protein Properties | Length: 417aa MW: 45232.2 Da PI: 4.78 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.6 | 1.9e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +C+++ lC +C + H+ H++ Potri.014G170600.1 4 VCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalskrHSR 44 6*****************************65677777765 PP | |||||||
2 | zf-B_box | 21.8 | 4e-07 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C++++++++ C + + lC++C +H g H++++ Potri.014G170600.1 46 LLCERCNSQPALVRCAEERISLCQNCDWIGH-GtstsastHRRQT 89 57**************************99*.5477888887765 PP | |||||||
3 | CCT | 63 | 9e-22 | 359 | 402 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+ktR FeKk+rY+sRKa+A+ R RvKGrFvk+ Potri.014G170600.1 359 RSDAVMRYKEKKKTRMFEKKVRYASRKARADVRRRVKGRFVKAG 402 889**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.812 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.1E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.23E-7 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 8.859 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.53E-5 | 47 | 90 | No hit | No description |
SMART | SM00336 | 3.4 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 4.7E-17 | 359 | 401 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.229 | 359 | 401 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MGYVCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSK RHSRTLLCER CNSQPALVRC 60 AEERISLCQN CDWIGHGTST SASTHRRQTI NSYSGCPSAS ELSSIWSFVL DFPSRGESTC 120 EQELGLMSIA ENSTTDSWGP TENTIGQNAS GVVEVNDRRE IAKSGVWLGS SSIPESSSVP 180 NNLDQTTRSA NTSLPKLCCP GTKCPAPYED ADLYEDFNMD EMDLSLENYE ELFGVTLNNS 240 EELLENGGID SLFGTKDMSG ADSSCQGAVA AEGSSVGVVN AVQPASSNAA SADSMMSNKT 300 EPILCFTEKQ GHSSLSFSGL NVESSAADYQ DCGASSMLLM GEPPWCPPCP ESPFSSANRS 360 DAVMRYKEKK KTRMFEKKVR YASRKARADV RRRVKGRFVK AGEAYDYDPL SQTRSF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G170600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214995 | 0.0 | AC214995.1 Populus trichocarpa clone POP004-B08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441090.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9SSE5 | 1e-153 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A2K1XX94 | 0.0 | A0A2K1XX94_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s16870.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4362 | 33 | 53 | Representative plant | OGRP1375 | 13 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-111 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G170600.1 |