PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G164300.3
Common NamePOPTR_0014s16220g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 328aa    MW: 36281.9 Da    PI: 7.5767
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G164300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.47.1e-29764260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
                        +Dgy+WrKYGqK vkg+ef rsYY+Ct+++C++kk++e+s+ d+k+ +i+Y geH+h+k
  Potri.014G164300.3  7 EDGYHWRKYGQKFVKGNEFIRSYYKCTHPSCQAKKQLECSH-DGKLADIVYLGEHEHPK 64
                        7***************************************9.***************85 PP
2WRKY106.41.5e-33117174259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vkg+++prsYYrC+s+gCpvkk+ver+++dpk+v++ Yeg+H+h+
  Potri.014G164300.3 117 SDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKLVITSYEGQHDHD 174
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.873165IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-25365IPR003657WRKY domain
SuperFamilySSF1182903.4E-23465IPR003657WRKY domain
SMARTSM007747.9E-32664IPR003657WRKY domain
PfamPF031061.1E-22763IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-36102176IPR003657WRKY domain
SuperFamilySSF1182903.66E-29108176IPR003657WRKY domain
PROSITE profilePS5081136.047111176IPR003657WRKY domain
SMARTSM007742.6E-38116175IPR003657WRKY domain
PfamPF031064.0E-26118173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MREKVSEDGY HWRKYGQKFV KGNEFIRSYY KCTHPSCQAK KQLECSHDGK LADIVYLGEH  60
EHPKPQHNLP QAVANSFVSN EQNRKKSSCN DSSTPVDTPT SEPRLVIQTK SEVDIVSDGY  120
RWRKYGQKLV KGNPNPRSYY RCSSPGCPVK KHVERASHDP KLVITSYEGQ HDHDMPPSRT  180
ITHNTTGLNT CTTTIQNGEL GTKSGESNAI SLEMVVYNSS DSNIKLEEKL SSESRNKWKE  240
SNSGHESKSC EQQTGNTNAT KVSGAANLDI VVNTNPVSAG RSTEQHDGES RIEPKENSAA  300
CGVHNITPGP ESNPNEQNVL NSEPVQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-385177275WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.48260.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G164300.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1442110.0EF144211.1 Populus trichocarpa clone PX0011_D15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375555.10.0WRKY transcription factor 1
RefseqXP_006375556.10.0WRKY transcription factor 1
RefseqXP_024440287.10.0WRKY transcription factor 1
SwissprotQ9ZQ702e-59WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLU5FVL10.0U5FVL1_POPTR; Uncharacterized protein
STRINGPOPTR_0014s16220.20.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.24e-62WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]