PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G164300.1
Common NamePOPTR_0014s16220g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 486aa    MW: 53397.6 Da    PI: 6.3833
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G164300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.61.3e-28106163260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +Dgy+WrKYGqK vkg+ef rsYY+Ct+++C++kk++e+s+ d+k+ +i+Y geH+h+k
  Potri.014G164300.1 106 EDGYHWRKYGQKFVKGNEFIRSYYKCTHPSCQAKKQLECSH-DGKLADIVYLGEHEHPK 163
                         7***************************************9.***************85 PP
2WRKY105.62.6e-33275332259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vkg+++prsYYrC+s+gCpvkk+ver+++dpk+v++ Yeg+H+h+
  Potri.014G164300.1 275 SDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKLVITSYEGQHDHD 332
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.873100164IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-25101164IPR003657WRKY domain
SuperFamilySSF1182902.75E-23101164IPR003657WRKY domain
SMARTSM007747.9E-32105163IPR003657WRKY domain
PfamPF031062.0E-22106162IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-35260334IPR003657WRKY domain
SuperFamilySSF1182906.8E-29266334IPR003657WRKY domain
PROSITE profilePS5081136.047269334IPR003657WRKY domain
SMARTSM007742.6E-38274333IPR003657WRKY domain
PfamPF031067.2E-26276331IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MVSSEEVPDE VSPKELQKRQ SLDDGTDTKP QTHDVGGASQ QEGIPASYAP GKSLENSGGR  60
ISELDKEGSV SSITPRKVSH TPGSDLRSLQ SGQEGRTPIM REKVSEDGYH WRKYGQKFVK  120
GNEFIRSYYK CTHPSCQAKK QLECSHDGKL ADIVYLGEHE HPKPQHNLPQ AVGCVLSVVE  180
EKPDHLLFTG VEESHEPHPI ESTNTPQISS VTSSEDVKRV LSEPKRIRDE VDVDDDQRSK  240
RRKKSSCNDS STPVDTPTSE PRLVIQTKSE VDIVSDGYRW RKYGQKLVKG NPNPRSYYRC  300
SSPGCPVKKH VERASHDPKL VITSYEGQHD HDMPPSRTIT HNTTGLNTCT TTIQNGELGT  360
KSGESNAISL EMVVYNSSDS NIKLEEKLSS ESRNKWKESN SGHESKSCEQ QTGNTNATKV  420
SGAANLDIVV NTNPVSAGRS TEQHDGESRI EPKENSAACG VHNITPGPES NPNEQNVLNS  480
EPVQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-37104335275WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.48260.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed to similar levels in root and flower, to a somewhat lower level in stem and to low levels in leaf and siliques. {ECO:0000269|PubMed:8972846}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G164300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774220.0GQ377422.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375555.10.0WRKY transcription factor 1
RefseqXP_006375556.10.0WRKY transcription factor 1
RefseqXP_024440287.10.0WRKY transcription factor 1
SwissprotQ9SI374e-89WRKY1_ARATH; WRKY transcription factor 1
TrEMBLU5FVL10.0U5FVL1_POPTR; Uncharacterized protein
STRINGPOPTR_0014s16220.20.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.23e-90zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]