PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G159500.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 504aa    MW: 54647.8 Da    PI: 7.762
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G159500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.34e-115275326
                        S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                         + C +++rtG C yG++C+F+H+
  Potri.014G159500.1 52 APDCGYYLRTGLCGYGSNCRFNHP 75
                        589********************9 PP
2zf-CCCH36.39.8e-12151175327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C ++++tGtCkyG++Ck++H++
  Potri.014G159500.1 151 QPDCGYYLKTGTCKYGSTCKYHHPR 175
                         789********************96 PP
3zf-CCCH34.63.2e-11197220427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         + C++++rt  Ck+G  CkF+H++
  Potri.014G159500.1 197 KSCPYYMRTRSCKFGVACKFHHPQ 220
                         56********************97 PP
4zf-CCCH35.71.5e-11344370127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++Cr+f+ tGtCkyG+ Ck++H++
  Potri.014G159500.1 344 PGQPECRHFMSTGTCKYGSDCKYHHPK 370
                         5789*********************96 PP
5zf-CCCH31.52.9e-10391415226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C++++ +G+Ck+G++C++ H+
  Potri.014G159500.1 391 GQAVCPDYSMYGICKFGPTCRYDHP 415
                         7899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.9534977IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-64976IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-95275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-55476IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-45574IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5148175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.643148176IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9151175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6153176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4154175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5192221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.962193221IPR000571Zinc finger, CCCH-type
SMARTSM003560.029195220IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-9196220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4198219IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6343370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.53343371IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9345370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-6347372IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5349370IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6389416IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53389417IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6390415IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7391415IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MPDHNNRQVK SNAVSNQSAE NIEEAIWRLK IHDHQEQGGM AQSSPYPDRP GAPDCGYYLR  60
TGLCGYGSNC RFNHPVYAAL VICVVTLEVV ILSLAHICGF SGTKQAWFIF HLMCISSTFD  120
LDFSLYFVVL ILLFSVQGAQ LREELPERVG QPDCGYYLKT GTCKYGSTCK YHHPRDRNGA  180
GPVSFNALGL PMRQDEKSCP YYMRTRSCKF GVACKFHHPQ PASLGTSFSL TGAAAFGSTG  240
SPIVPSSGLP YVGGLPTWSL PRAPLMSGTN LQGPQAYMPV VVSPSPGIIP VPGWNTYVGN  300
LNPMSSSSIL GSNRAYDSRN QGDSGSGGQV HLLSTVSPIL PERPGQPECR HFMSTGTCKY  360
GSDCKYHHPK ERIAQLATNT MGLLGLPSRP GQAVCPDYSM YGICKFGPTC RYDHPIHTYP  420
YNYSLSLPSL SIMDSSLITY PRMAQAAPVT LSKLPDLIHN PDGASYNKHQ NPDTSTKISD  480
DPTEQAGSPP PHSSQASSEP SHD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G159500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320490.10.0zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBLB9IAL10.0B9IAL1_POPTR; Uncharacterized protein
STRINGPOPTR_0014s15770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.27e-86C3H family protein