PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G155100.1 | ||||||||
Common Name | POPTR_0014s15320g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 625aa MW: 67470.5 Da PI: 6.1534 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.6 | 1.7e-30 | 351 | 409 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Potri.014G155100.1 351 SDGCQWRKYGQKLAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 409 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.1E-33 | 335 | 411 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-27 | 344 | 411 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.044 | 345 | 411 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-36 | 350 | 410 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.3E-27 | 352 | 409 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 625 aa Download sequence Send to blast |
MAKGRGVLSI DSDLISTTSA FFLHKPTVLN SFPDQENIVN PKWKQLATTG RQTMDATSAR 60 SPPTTIQFPV KLINTNDARD DDDDEDDDDD DSSFPSDNRR RTVIDEMDFF ARKKHDDGYP 120 ITNNSTDDLK DSGSPTGLEL NVNTGLNLLT TNTSSDQSMV DDGISSNMED KRAKSELAVL 180 QAEVERMKVE NLRLKDMLNQ VTSNYNALQM HLVTLTQDQK SHHKNEKLDG KNKNNGMVPR 240 QFMDLGLVAA AAAGDTDDLS LSTSEGGRSR DRSRSPGNNV ENNNEDGALV FDQDKKGFAR 300 GADHREDSPG QGWASNKVAR LNSAKTIDQT EATIRKARVS VRARSEDAMI SDGCQWRKYG 360 QKLAKGNPCP RAYYRCTMAA GCPVRKQVQR CAEDRTILIT TYEGNHNHPL PPAAMAMAST 420 TSSAARMLLS GSMSSADGLL NSNFLTRTLL PCSSNLATIS ASAPFPTVTL DLTQNPNPLQ 480 LPKQPTQFQF PFPNAPQDPA NASATALLPQ IFGQALYNQS KFSGLQMSQH MEPNRLGQQS 540 QPASQQNPLA DSLAAATAAI AADPNFTAAL AAAITSIIGG AHQNNVNSTN NAQTTTSNSN 600 GNITISNSNS NGHNKTSNSS FPGN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-22 | 337 | 413 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.15491 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G155100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147673 | 0.0 | EF147673.1 Populus trichocarpa clone WS0124_D24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002321134.3 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-144 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A2K1XWC2 | 0.0 | A0A2K1XWC2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s15320.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 2e-99 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G155100.1 |
Entrez Gene | 7462063 |