PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G148900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 573aa MW: 62308.3 Da PI: 7.9531 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.8 | 9.6e-09 | 379 | 426 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Potri.014G148900.1 379 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 426 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.58E-17 | 373 | 444 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.96E-10 | 373 | 430 | No hit | No description |
PROSITE profile | PS50888 | 15.663 | 375 | 425 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-17 | 375 | 444 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.8E-6 | 379 | 426 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-10 | 381 | 431 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MERDKLFVSE GANTAATIWN SCSFGMEMQA NELSCGPEKL ANCFLNPNWD NSLDQSDPFE 60 SALSSIVSSP VASGANANAN AIPNAGVGGD SLMIRELIGR LGNICNSGDI SLQSFVNNNN 120 NSTNTSCYST PMNSPPKLNL SMMDSQMRGN LPIPGNSVVK HPGLAPFPAD FVERAARYSC 180 FGSNNPGGIN KQFGLNESEL INRLMPRVEP GKLSRVSSNN SMKVTVSQAN VQESNKSSPQ 240 DGSLNSEKKF SRQSRPTTSE NGDSREESSL SEQVPGGKLS MKSQNDANSR KRKSIPRGKA 300 KETPSSSPSA SDVKVAAEND ESKAKRSKSD ETNGSDKDTA KEKEEENGNQ KQNKNNSKPP 360 EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCNKVTG KAVMLDEIIN 420 YVQSLQRQVE FLSMKLSSVN PRMEINMETL LSKDIFQSRG SMPHSLYPLD ASTPVFPYGY 480 QSQQGLALQN GMPSNAETQF SMNPLNAALR RNPSMHLPHL DGFGDPAALQ LEFYSSGLSH 540 VGRRPSKCCA DGIWSESSGE LSRLSALNSH EN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 288 | 293 | SRKRKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G148900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU232845 | 0.0 | CU232845.1 Populus EST from severe drought-stressed opposite wood. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441353.1 | 0.0 | transcription factor bHLH78 isoform X1 | ||||
TrEMBL | B9IAB6 | 0.0 | B9IAB6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s14650.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2530 | 34 | 80 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 2e-69 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G148900.1 |