PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.014G146200.2 | ||||||||
Common Name | POPTR_0014s14320g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 975aa MW: 104789 Da PI: 4.2919 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.9e-05 | 22 | 44 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg +F++++ rH r H Potri.014G146200.2 22 YVCHKCGWPFPNPHPSARHRRAH 44 9*******************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.829 | 22 | 44 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 24 | 44 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 975 aa Download sequence Send to blast |
MDSQDPRKNP THTPGHESHG VYVCHKCGWP FPNPHPSARH RRAHKKICGT LEGYKFVDSE 60 ETPLSALSDD DHGSDEDPKT PSPKGLERGI NEKGCGGVGS RSNRSEDDVF TDAIAEFPES 120 GSSPVTGEHT RDVKEPEINL EINKATAQSS EDGSITVISP PPSNSADHIQ MQSTEVPVIN 180 LSGSAQESLD HGSNATIASM TRSLTDCRGE ESDFEHSHDN GSSAWDSIPI KLETQTDASQ 240 ENKKSGTVED LPETDAKGNE ETKLDGQLLD VVVSTDDNAE DASESQKMED VTSQPVPAAE 300 VLQLKEGGYT DDLASGMSLN DLSPEVNLAE PAHSSISTAQ IEGDTQEIDS AVYVNSAVSY 360 DNKGEGNGNM HVLIVPNDLT LVADAENMVK GFKDLEGGKL PQLMNMDSFE VSNNVKDSDL 420 KNNPQGFNSR PLTEDTEVSA SNMHVLNDNL EPKDGTSQHI VELPDEAEAD MPQRSEVGVT 480 DVVTGDLEKS ISVHSPEEDV PRDHCETSSM TRSIEHATKA TSDTNTVVVP MDAEVRQTNL 540 IGMDDTGNDE KDKIESSEVG ENDKNKRNTK ESFAENRIPP SKHASISSEQ ADQRNSVLGD 600 VKAAGLEEGK IERCNASEIV TEGDSVSGLG EENLLREPKS TPESAVNVES CFTSENDINV 660 CEGRLPQLAS IPSEQADQRN SVLGDVKAAG LEEGKIERCN ASEIVTEGDN NLVTQQVVAS 720 ATDFSVDSIS QTDSLEGHWG SVSVLSTQSD IPAILDAEPL PSNGSQALSE AEKATLKKPI 780 AASETEHADK SDIFDPPSFM TLVEPRDVVN QKAAASEIQT TGNPQQPKAA SVQAGWFPSI 840 TNVLSESQGR KKNEEIIAKV TNWSTGEQHP SLRSPQHTPL KSLLGEASME TKSKALNAKE 900 IPVEKDGFAA KDNGALPKTV SSILAPQEPV GEPAMVEEKA WSSPARYPAD IKREKRKVRG 960 RPYWAQFVCC SSVN* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.014G146200.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC214097 | 1e-121 | AC214097.1 Populus trichocarpa clone POP027-H14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024440950.1 | 0.0 | uncharacterized protein LOC18105314 isoform X1 | ||||
TrEMBL | A0A2K1XVT9 | 0.0 | A0A2K1XVT9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s14320.1 | 0.0 | (Populus trichocarpa) |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.014G146200.2 |
Entrez Gene | 18105314 |