PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.014G146200.1

Common Name

POPTR_0014s14320g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 1122aa MW: 120271 Da PI: 4.2449

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.014G146200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9.2e-05	22	44	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg +F++++ rH r H Potri.014G146200.1 22 YVCHKCGWPFPNPHPSARHRRAH 44 9*******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.829	22	44	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	24	44	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1122 aa Download sequence Send to blast
MDSQDPRKNP THTPGHESHG VYVCHKCGWP FPNPHPSARH RRAHKKICGT LEGYKFVDSE 60 ETPLSALSDD DHGSDEDPKT PSPKGLERGI NEKGCGGVGS RSNRSEDDVF TDAIAEFPES 120 GSSPVTGEHT RDVKEPEINL EINKATAQSS EDGSITVISP PPSNSADHIQ MQSTEVPVIN 180 LSGSAQESLD HGSNATIASM TRSLTDCRGE ESDFEHSHDN GSSAWDSIPI KLETQTDASQ 240 ENKKSGTVED LPETDAKGNE ETKLDGQLLD VVVSTDDNAE DASESQKMED VTSQPVPAAE 300 VLQLKEGGYT DDLASGMSLN DLSPEVNLAE PAHSSISTAQ IEGDTQEIDS AVYVNSAVSY 360 DNKGEGNGNM HVLIVPNDLT LVADAENMVK GFKDLEGGKL PQLMNMDSFE VSNNVKDSDL 420 KNNPQGFNSR PLTEDTEVSA SNMHVLNDNL EPKDGTSQHI VELPDEAEAD MPQRSEVGVT 480 DVVTGDLEKS ISVHSPEEDV PRDHCETSSM TRSIEHATKA TSDTNTVVVP MDAEVRQTNL 540 IGMDDTGNDE KDKIESSEVG ENDKNKRNTK ESFAENRIPP SKHASISSEQ ADQRNSVLGD 600 VKAAGLEEGK IERCNASEIV TEGDSVSGLG EENLLREPKS TPESAVNVES CFTSENDINV 660 CEGRLPQLAS IPSEQADQRN SVLGDVKAAG LEEGKIERCN ASEIVTEGDS VSGLGEENPS 720 RGPKTTPESA VNVESCFISE NDINVCEGKL PQHEHTDIGG VLDPQESRKE PESNGMANQL 780 VERAGEVSAA AESYSGGDAE VLWKSSEDKM VREPLVSRSE PSSSLQNSSP VADNQAKDFL 840 GVASGNTPES LPDEGDNNLV TQQVVASATD FSVDSISQTD SLEGHWGSVS VLSTQSDIPA 900 ILDAEPLPSN GSQALSEAEK ATLKKPIAAS ETEHADKSDI FDPPSFMTLV EPRDVVNQKA 960 AASEIQTTGN PQQPKAASVQ AGWFPSITNV LSESQGRKKN EEIIAKVTNW STGEQHPSLR 1020 SPQHTPLKSL LGEASMETKS KALNAKEIPV EKDGFAAKDN GALPKTVSSI LAPQEPVGEP 1080 AMVEEKAWSS PARYPADIKR EKRKVRGRPY WAQFVCCSSV N*

Sequence ? help Back to Top

Protein Sequence Length: 1122 aa Download sequence Send to blast

MDSQDPRKNP THTPGHESHG VYVCHKCGWP FPNPHPSARH RRAHKKICGT LEGYKFVDSE  60
ETPLSALSDD DHGSDEDPKT PSPKGLERGI NEKGCGGVGS RSNRSEDDVF TDAIAEFPES  120
GSSPVTGEHT RDVKEPEINL EINKATAQSS EDGSITVISP PPSNSADHIQ MQSTEVPVIN  180
LSGSAQESLD HGSNATIASM TRSLTDCRGE ESDFEHSHDN GSSAWDSIPI KLETQTDASQ  240
ENKKSGTVED LPETDAKGNE ETKLDGQLLD VVVSTDDNAE DASESQKMED VTSQPVPAAE  300
VLQLKEGGYT DDLASGMSLN DLSPEVNLAE PAHSSISTAQ IEGDTQEIDS AVYVNSAVSY  360
DNKGEGNGNM HVLIVPNDLT LVADAENMVK GFKDLEGGKL PQLMNMDSFE VSNNVKDSDL  420
KNNPQGFNSR PLTEDTEVSA SNMHVLNDNL EPKDGTSQHI VELPDEAEAD MPQRSEVGVT  480
DVVTGDLEKS ISVHSPEEDV PRDHCETSSM TRSIEHATKA TSDTNTVVVP MDAEVRQTNL  540
IGMDDTGNDE KDKIESSEVG ENDKNKRNTK ESFAENRIPP SKHASISSEQ ADQRNSVLGD  600
VKAAGLEEGK IERCNASEIV TEGDSVSGLG EENLLREPKS TPESAVNVES CFTSENDINV  660
CEGRLPQLAS IPSEQADQRN SVLGDVKAAG LEEGKIERCN ASEIVTEGDS VSGLGEENPS  720
RGPKTTPESA VNVESCFISE NDINVCEGKL PQHEHTDIGG VLDPQESRKE PESNGMANQL  780
VERAGEVSAA AESYSGGDAE VLWKSSEDKM VREPLVSRSE PSSSLQNSSP VADNQAKDFL  840
GVASGNTPES LPDEGDNNLV TQQVVASATD FSVDSISQTD SLEGHWGSVS VLSTQSDIPA  900
ILDAEPLPSN GSQALSEAEK ATLKKPIAAS ETEHADKSDI FDPPSFMTLV EPRDVVNQKA  960
AASEIQTTGN PQQPKAASVQ AGWFPSITNV LSESQGRKKN EEIIAKVTNW STGEQHPSLR  1020
SPQHTPLKSL LGEASMETKS KALNAKEIPV EKDGFAAKDN GALPKTVSSI LAPQEPVGEP  1080
AMVEEKAWSS PARYPADIKR EKRKVRGRPY WAQFVCCSSV N*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.014G146200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214097	1e-121	AC214097.1 Populus trichocarpa clone POP027-H14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024440950.1	0.0	uncharacterized protein LOC18105314 isoform X1
TrEMBL	A0A2K1XVT9	0.0	A0A2K1XVT9_POPTR; Uncharacterized protein
STRING	POPTR_0014s14320.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5051	17	19
Representative plant	OGRP7449	2	2

Link Out ? help Back to Top
Phytozome	Potri.014G146200.1
Entrez Gene	18105314