PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.014G135700.2

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HB-other

Protein Properties

Length: 956aa MW: 107031 Da PI: 5.4227

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.014G135700.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.3	8.1e-06	725	785	1	54
TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt ++++q++ +e++ ++ + +a++ + A+kl ++t +q k+W Nr+a+ Potri.014G135700.2 725 KRKRTIMNDHQITLMEKALLDEPEMqrNAAALQSWADKLslhgsEVTPSQLKNWLNNRKAR 785 79***************99777722567899**9999999************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-5	714	788	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.301	722	789	IPR001356	Homeobox domain
SMART	SM00389	3.2E-6	724	793	IPR001356	Homeobox domain
CDD	cd00086	1.19E-5	725	788	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 956 aa Download sequence Send to blast
MRLAKEELSM AEQVIDLISA VKELHGLSSQ ELNKLLRDSE NFTIHFHSEK GSTTKIDVEK 60 LAGFLPLHLI AVLMSSDRDE SLLRYLLCGI RLLHSLCDLG PRNSKLEQVL LDDVKVSEQL 120 LDLVFYLLIV LGGYRQENLN SCSLLLVHSA LVASSLHLLS GCISSQWQDL VQVLLAHPKV 180 DIFMDAAFGA VHVAIRFLQV KLSDQHTGLH VKSPTAEQIV NYICQQCEAS LQTLQSLCQQ 240 KMFRERLLRN KELCGRGGVL FLAQAILKLN ITPPFVDSFT VVAAVSRLKA KVLSILLHLC 300 EAESISYLDE VASSPWSLDL AKSVVLEILE LLKAALSKDP NHLSPCSDRT FPMGLLRLNA 360 MRLADIFSDD SNFRSYITTC FTKVLTAIFS LPHGDFLSIW CSSEFPPREE DGTLEYDAFT 420 AAGWFLDTFA AANQSNAINL EITLIPSNMP QAMYAHQRTS LFVKLIANLH CFVPNICEEQ 480 ERNLFLHKFL ECMRMDPSKS LPGFSFTSGA LRAVTVCRNL RSLLSHAESL IPNFLNEEDV 540 QLLRVFFNQL QSLINPTDFE ENQVQEIKSE RSISLDKFCR LTIDEHLQEA QSTGAYGSPM 600 VMKEPSHLYN RTDIQKEEMS ENSAIQEEEK PNFKNRNQAE DAIKEDKAKP GACVSDVLRE 660 IDRDAHTVET SGSDTSSTRG KTYAGQVVNG DFLKSSEHIK RNGCQGVCGG EKVESPHFEE 720 KQPRKRKRTI MNDHQITLME KALLDEPEMQ RNAAALQSWA DKLSLHGSEV TPSQLKNWLN 780 NRKARLARAG KDVRAPMEVD NTFPEKQVGQ AQQQDTPESP SEDNITSSAR GLQNTSEIGV 840 FGDPEAGIGL ADFVDIGASE FVQCKPGQFV VLVDGQGEEI GKGKVYQVQG KWYGRILEES 900 EMCVVDVTEL KTEKWVRLPY PSETTGMSFY EAEQKIGVMR VLWDSNKIYM SRPQC*

Sequence ? help Back to Top

Protein Sequence Length: 956 aa Download sequence Send to blast

MRLAKEELSM AEQVIDLISA VKELHGLSSQ ELNKLLRDSE NFTIHFHSEK GSTTKIDVEK  60
LAGFLPLHLI AVLMSSDRDE SLLRYLLCGI RLLHSLCDLG PRNSKLEQVL LDDVKVSEQL  120
LDLVFYLLIV LGGYRQENLN SCSLLLVHSA LVASSLHLLS GCISSQWQDL VQVLLAHPKV  180
DIFMDAAFGA VHVAIRFLQV KLSDQHTGLH VKSPTAEQIV NYICQQCEAS LQTLQSLCQQ  240
KMFRERLLRN KELCGRGGVL FLAQAILKLN ITPPFVDSFT VVAAVSRLKA KVLSILLHLC  300
EAESISYLDE VASSPWSLDL AKSVVLEILE LLKAALSKDP NHLSPCSDRT FPMGLLRLNA  360
MRLADIFSDD SNFRSYITTC FTKVLTAIFS LPHGDFLSIW CSSEFPPREE DGTLEYDAFT  420
AAGWFLDTFA AANQSNAINL EITLIPSNMP QAMYAHQRTS LFVKLIANLH CFVPNICEEQ  480
ERNLFLHKFL ECMRMDPSKS LPGFSFTSGA LRAVTVCRNL RSLLSHAESL IPNFLNEEDV  540
QLLRVFFNQL QSLINPTDFE ENQVQEIKSE RSISLDKFCR LTIDEHLQEA QSTGAYGSPM  600
VMKEPSHLYN RTDIQKEEMS ENSAIQEEEK PNFKNRNQAE DAIKEDKAKP GACVSDVLRE  660
IDRDAHTVET SGSDTSSTRG KTYAGQVVNG DFLKSSEHIK RNGCQGVCGG EKVESPHFEE  720
KQPRKRKRTI MNDHQITLME KALLDEPEMQ RNAAALQSWA DKLSLHGSEV TPSQLKNWLN  780
NRKARLARAG KDVRAPMEVD NTFPEKQVGQ AQQQDTPESP SEDNITSSAR GLQNTSEIGV  840
FGDPEAGIGL ADFVDIGASE FVQCKPGQFV VLVDGQGEEI GKGKVYQVQG KWYGRILEES  900
EMCVVDVTEL KTEKWVRLPY PSETTGMSFY EAEQKIGVMR VLWDSNKIYM SRPQC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	720	726	KQPRKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.014G135700.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC182665	0.0	AC182665.2 Populus trichocarpa clone Pop1-18D20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024441458.1	0.0	nodulin homeobox
TrEMBL	A0A2K1XV78	0.0	A0A2K1XV78_POPTR; Uncharacterized protein
STRING	POPTR_0002s22800.1	0.0	(Populus trichocarpa)

Link Out ? help Back to Top
Phytozome	Potri.014G135700.2