PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.014G132800.2

Common Name

POPTR_0014s12730g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HB-other

Protein Properties

Length: 1119aa MW: 122888 Da PI: 8.5181

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.014G132800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.8	5e-05	65	121	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++e+F + s++e ++++ + g t +qV+ +F +R++ +k Potri.014G132800.2 65 KRPRDLINPKAVKYMQEVFTIKDAFSKKESRDISVQFGATVTQVRDFFASQRTRVRK 121 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.167	62	122	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.29E-5	64	125	IPR009057	Homeodomain-like
SMART	SM00389	0.0013	64	126	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.8E-5	65	130	IPR009057	Homeodomain-like
CDD	cd00086	0.00444	65	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1119 aa Download sequence Send to blast
MEDLTETEIG SSVESFQKFL DSQREVFHNQ IDHLRRIVVT QCKLTGVNPL SQEMAPGALS 60 IKIGKRPRDL INPKAVKYMQ EVFTIKDAFS KKESRDISVQ FGATVTQVRD FFASQRTRVR 120 KLIRLSMEKA IRVNAHKEPQ NGVLTTSDAL MPIDLVPLNS VDPNQVPLNY VCSNPAMLNS 180 VSPNPIHLNS AGSISAPLNS VSSISAPLNS VSPNPFHLES VSSNPVPLIS VSPNPVPLNH 240 ASLYPVPLDS VARNPVPLNS AGPSRVDEAP SCSTQDDMLP GLDELDKHFV ENIFGLLRKE 300 ETFTGQVKLM EWILQIHTLS VLNWFLFNGG VMILVTWLSQ AAAEEQTSVL IVTLNVFCHL 360 PLHKAPPEHM SAILRGVNRL RFYRTSDISN RARVLLSRWS KVFARSQAMK KPYGVNFSTD 420 AQDMILKQSI DEIMGNELWQ SDISNPDGVP ALSLESSENI RKIESSQALK LLPASTDDPS 480 RKHILGAPSS HTRERRKVQL VEQPGQKTAG RSPQATKAAP VSTGRPMSAD DIQKAKMRAL 540 FMQNKHGKTG LSSNGNTGMK NGPSSMSASL SLVSKIHIRP KIEEYKKPVM PPLEVSCKVE 600 GSLNPKKEID SKEAMWGVCI EVKIPWKTPP EIKLNVLWRV GTGENGKEVD VQKNRNRREV 660 ETIYQTVQEL PSNPKEPWDL EMDYDDTLTP EIPIEQPPDA DGAEIQVSLT EHVNTVVAPS 720 PAPSLPQVGG GSATEPDLEL LAVLLKNPEL VFALTSGQAG NLSSEETVKL LDMIKAGGAG 780 LAGSLNGLVG KVGEKVEVSL PSPTPSSNPG TSGWRSEGDK NPFSQQASSG NRVAYTDPGV 840 PTVAPLAENT SSVQRQNQAT NIRTPQQQAS RPILSQHHPF SLSQTSIIVP ENRQPPMVLQ 900 SQQSYPTNSS MLHTPSSEIV FTMKNLPVNT PSLPNPSAAI GPSMWVETMN NVKPAPSISL 960 TSNPPERWPV PFPRSTSAVP APTQLQSHIN EPPTVHSSWP HTGDVGPMRD SWRVRQSLVS 1020 NSPSHVNQNN YVPPYGGPVQ PQLRSGPPRE RNEYLGDEGI ESWSPENSRF ESQEYMSGRN 1080 YSGARTNSGW DYLPDNRSRQ RNSSGYRDRN RNGNRRRH*

Sequence ? help Back to Top

Protein Sequence Length: 1119 aa Download sequence Send to blast

MEDLTETEIG SSVESFQKFL DSQREVFHNQ IDHLRRIVVT QCKLTGVNPL SQEMAPGALS  60
IKIGKRPRDL INPKAVKYMQ EVFTIKDAFS KKESRDISVQ FGATVTQVRD FFASQRTRVR  120
KLIRLSMEKA IRVNAHKEPQ NGVLTTSDAL MPIDLVPLNS VDPNQVPLNY VCSNPAMLNS  180
VSPNPIHLNS AGSISAPLNS VSSISAPLNS VSPNPFHLES VSSNPVPLIS VSPNPVPLNH  240
ASLYPVPLDS VARNPVPLNS AGPSRVDEAP SCSTQDDMLP GLDELDKHFV ENIFGLLRKE  300
ETFTGQVKLM EWILQIHTLS VLNWFLFNGG VMILVTWLSQ AAAEEQTSVL IVTLNVFCHL  360
PLHKAPPEHM SAILRGVNRL RFYRTSDISN RARVLLSRWS KVFARSQAMK KPYGVNFSTD  420
AQDMILKQSI DEIMGNELWQ SDISNPDGVP ALSLESSENI RKIESSQALK LLPASTDDPS  480
RKHILGAPSS HTRERRKVQL VEQPGQKTAG RSPQATKAAP VSTGRPMSAD DIQKAKMRAL  540
FMQNKHGKTG LSSNGNTGMK NGPSSMSASL SLVSKIHIRP KIEEYKKPVM PPLEVSCKVE  600
GSLNPKKEID SKEAMWGVCI EVKIPWKTPP EIKLNVLWRV GTGENGKEVD VQKNRNRREV  660
ETIYQTVQEL PSNPKEPWDL EMDYDDTLTP EIPIEQPPDA DGAEIQVSLT EHVNTVVAPS  720
PAPSLPQVGG GSATEPDLEL LAVLLKNPEL VFALTSGQAG NLSSEETVKL LDMIKAGGAG  780
LAGSLNGLVG KVGEKVEVSL PSPTPSSNPG TSGWRSEGDK NPFSQQASSG NRVAYTDPGV  840
PTVAPLAENT SSVQRQNQAT NIRTPQQQAS RPILSQHHPF SLSQTSIIVP ENRQPPMVLQ  900
SQQSYPTNSS MLHTPSSEIV FTMKNLPVNT PSLPNPSAAI GPSMWVETMN NVKPAPSISL  960
TSNPPERWPV PFPRSTSAVP APTQLQSHIN EPPTVHSSWP HTGDVGPMRD SWRVRQSLVS  1020
NSPSHVNQNN YVPPYGGPVQ PQLRSGPPRE RNEYLGDEGI ESWSPENSRF ESQEYMSGRN  1080
YSGARTNSGW DYLPDNRSRQ RNSSGYRDRN RNGNRRRH*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Accumulates prior to flowering in the vegetative shoot apical meristem and after flowering in floral meristems.
Uniprot	TISSUE SPECIFICITY: Expressed in shoot apex, root apex, leaf primordia and floral buds.

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.014G132800.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024440704.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	1e-170	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A2K1XUY1	0.0	A0A2K1XUY1_POPTR; Uncharacterized protein
STRING	POPTR_0014s12730.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-105	HB-other family protein

Link Out ? help Back to Top
Phytozome	Potri.014G132800.2
Entrez Gene	7491316

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]