PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.014G132800.1

Common Name

POPTR_0014s12730g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HB-other

Protein Properties

Length: 1137aa MW: 124915 Da PI: 8.7718

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.014G132800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.8	5.1e-05	57	113	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++e+F + s++e ++++ + g t +qV+ +F +R++ +k Potri.014G132800.1 57 KRPRDLINPKAVKYMQEVFTIKDAFSKKESRDISVQFGATVTQVRDFFASQRTRVRK 113 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.167	54	114	IPR001356	Homeobox domain
SMART	SM00389	0.0013	56	118	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.38E-5	56	117	IPR009057	Homeodomain-like
CDD	cd00086	0.00452	57	113	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.0E-5	57	122	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1137 aa Download sequence Send to blast
MEDLTETEIG SSVESFQKFL DSQREVFHNQ IDHLRRIVVT QCKLTGAAGA LSIKIGKRPR 60 DLINPKAVKY MQEVFTIKDA FSKKESRDIS VQFGATVTQV RDFFASQRTR VRKLIRLSME 120 KAIRVNAHKE PQNGVLTTSD ALMPIDLVPL NSVDPNQVPL NYVCSNPAML NSVSPNPIHL 180 NSAGSISAPL NSVSSISAPL NSVSPNPFHL ESVSSNPVPL ISVSPNPVPL NHASLYPVPL 240 DSVARNPVPL NSAGPSRVDE APSCSTQDDM LPGLDELDKH FVENIFGLLR KEETFTGQVK 300 LMEWILQIHT LSVLNWFLFN GGVMILVTWL SQAAAEEQTS VLIVTLNVFC HLPLHKAPPE 360 HMSAILRGVN RLRFYRTSDI SNRARVLLSR WSKVFARSQA MKKPYGVNFS TDAQDMILKQ 420 RQVHEITSYN LKICSIKSHL LALISCSIDE IMGNELWQSD ISNPDGVPAL SLESSENIRK 480 IESSQALKLL PASTDDPSRK HILGAPSSHT RERRKVQLVE QPGQKTAGRS PQATKAAPVS 540 TGRPMSADDI QKAKMRALFM QNKHGKTGLS SNGNTGMKNG PSSMSASLSL VSKIHIRPKI 600 EEYKKPVMPP LEVSCKVEGS LNPKKEIDSK EAMWGVCIEV KIPWKTPPEI KLNVLWRVGT 660 GENGKEVDVQ KNRNRREVET IYQTVQELPS NPKEPWDLEM DYDDTLTPEI PIEQPPDADG 720 AEIQVSLTEH VNTVVAPSPA PSLPQVGGGS ATEPDLELLA VLLKNPELVF ALTSGQAGNL 780 SSEETVKLLD MIKAGGAGLA GSLNGLVGKV GEKVEVSLPS PTPSSNPGTS GWRSEGDKNP 840 FSQQASSGNR VAYTDPGVPT VAPLAENTSS VQRQNQATNI RTPQQQASRP ILSQHHPFSL 900 SQTSIIVPEN RQPPMVLQSQ QSYPTNSSML HTPSSEIVFT MKNLPVNTPS LPNPSAAIGP 960 SMWVETMNNV KPAPSISLTS NPPERWPVPF PRSTSAVPAP TQLQSHINEP PTVHSSWPHT 1020 GDVGPMRDSW RVRQSLVSNS PSHVNQNNYV PPYGGPVQPQ LRSGPPRERN EYLGDEGIES 1080 WSPENSRFES QEYMSGRNYS GARTNSGWDY LPDNRSRQRN SSGYRDRNRN GNRRRH*

Sequence ? help Back to Top

Protein Sequence Length: 1137 aa Download sequence Send to blast

MEDLTETEIG SSVESFQKFL DSQREVFHNQ IDHLRRIVVT QCKLTGAAGA LSIKIGKRPR  60
DLINPKAVKY MQEVFTIKDA FSKKESRDIS VQFGATVTQV RDFFASQRTR VRKLIRLSME  120
KAIRVNAHKE PQNGVLTTSD ALMPIDLVPL NSVDPNQVPL NYVCSNPAML NSVSPNPIHL  180
NSAGSISAPL NSVSSISAPL NSVSPNPFHL ESVSSNPVPL ISVSPNPVPL NHASLYPVPL  240
DSVARNPVPL NSAGPSRVDE APSCSTQDDM LPGLDELDKH FVENIFGLLR KEETFTGQVK  300
LMEWILQIHT LSVLNWFLFN GGVMILVTWL SQAAAEEQTS VLIVTLNVFC HLPLHKAPPE  360
HMSAILRGVN RLRFYRTSDI SNRARVLLSR WSKVFARSQA MKKPYGVNFS TDAQDMILKQ  420
RQVHEITSYN LKICSIKSHL LALISCSIDE IMGNELWQSD ISNPDGVPAL SLESSENIRK  480
IESSQALKLL PASTDDPSRK HILGAPSSHT RERRKVQLVE QPGQKTAGRS PQATKAAPVS  540
TGRPMSADDI QKAKMRALFM QNKHGKTGLS SNGNTGMKNG PSSMSASLSL VSKIHIRPKI  600
EEYKKPVMPP LEVSCKVEGS LNPKKEIDSK EAMWGVCIEV KIPWKTPPEI KLNVLWRVGT  660
GENGKEVDVQ KNRNRREVET IYQTVQELPS NPKEPWDLEM DYDDTLTPEI PIEQPPDADG  720
AEIQVSLTEH VNTVVAPSPA PSLPQVGGGS ATEPDLELLA VLLKNPELVF ALTSGQAGNL  780
SSEETVKLLD MIKAGGAGLA GSLNGLVGKV GEKVEVSLPS PTPSSNPGTS GWRSEGDKNP  840
FSQQASSGNR VAYTDPGVPT VAPLAENTSS VQRQNQATNI RTPQQQASRP ILSQHHPFSL  900
SQTSIIVPEN RQPPMVLQSQ QSYPTNSSML HTPSSEIVFT MKNLPVNTPS LPNPSAAIGP  960
SMWVETMNNV KPAPSISLTS NPPERWPVPF PRSTSAVPAP TQLQSHINEP PTVHSSWPHT  1020
GDVGPMRDSW RVRQSLVSNS PSHVNQNNYV PPYGGPVQPQ LRSGPPRERN EYLGDEGIES  1080
WSPENSRFES QEYMSGRNYS GARTNSGWDY LPDNRSRQRN SSGYRDRNRN GNRRRH*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Accumulates prior to flowering in the vegetative shoot apical meristem and after flowering in floral meristems.
Uniprot	TISSUE SPECIFICITY: Expressed in shoot apex, root apex, leaf primordia and floral buds.

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.014G132800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024440704.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	1e-165	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A2K1XV19	0.0	A0A2K1XV19_POPTR; Uncharacterized protein
STRING	POPTR_0014s12730.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34
Representative plant	OGRP4121	13	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-99	HB-other family protein

Link Out ? help Back to Top
Phytozome	Potri.014G132800.1
Entrez Gene	7491316

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]