PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G132700.1 | ||||||||
Common Name | POPTR_0014s12720g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 472aa MW: 52308.7 Da PI: 9.2623 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.6 | 1.1e-05 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Potri.014G132700.1 6 FVCEICNKGFQRDQNLQFHRRGH 28 89*******************88 PP | |||||||
2 | zf-C2H2 | 16.6 | 2.3e-05 | 64 | 86 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H+rt+ Potri.014G132700.1 64 WKCDKCSKKYAVQSDWKAHQRTC 86 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.93E-9 | 5 | 28 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.1E-5 | 5 | 28 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.069 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.824 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.1E-6 | 52 | 85 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.93E-9 | 59 | 85 | No hit | No description |
SMART | SM00355 | 85 | 64 | 84 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
METNRFVCEI CNKGFQRDQN LQFHRRGHNP PWKLWQRTAT EVRKRVYLTG IKKHFSRNNG 60 EKKWKCDKCS KKYAVQSDWK AHQRTCGTRE YKCDCGTIFS RRDCFITHRA FCDALAEENS 120 KVNQGVMANM GSNLQNQMSE PMSSHSMPLS TDTSTSIGMP YFNSFDPKNS LKYLPQELVP 180 IPSKSMNMAG GMFSSSSGTL FGSPRSISST SSLQLSSKGS SGLHYLQDNK NGCQISASAH 240 MSATAMLKEA AQMGATASNS INSPVMQKSF ASSMAGPHDQ LSSIKPPTYG RIQQHNTSYD 300 HLPLHASGQT SMAGINGVGG FSNQPLQRGP QETSQILDTS GTVNSAMNDM EMFTGVFMSN 360 DQNPGFIRNM EQEDSGGSSL IHGRNPLMER NPTGPSRFAG TSIEGGDMMT RDFRGVGGAR 420 PTNLHDQRQQ HQQRLEMEGM SQQQRMPMMN PFQQQPSLRE SAMEKPSIWD V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-33 | 60 | 123 | 3 | 66 | Zinc finger protein JACKDAW |
5b3h_F | 4e-33 | 60 | 123 | 3 | 66 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G132700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011033580.1 | 0.0 | PREDICTED: zinc finger protein NUTCRACKER-like | ||||
Swissprot | Q9SCQ6 | 1e-71 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A3N7FC77 | 0.0 | A0A3N7FC77_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s12720.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2192 | 30 | 85 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.2 | 5e-61 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G132700.1 |
Entrez Gene | 7457954 |
Publications ? help Back to Top | |||
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