PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G126100.1 | ||||||||
Common Name | POPTR_0014s12090g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 310aa MW: 34988.8 Da PI: 5.3026 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.5e-19 | 76 | 124 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g Potri.014G126100.1 76 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 124 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.1E-38 | 75 | 138 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-22 | 75 | 133 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.775 | 75 | 132 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-32 | 75 | 133 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-12 | 76 | 124 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.00E-33 | 76 | 133 | No hit | No description |
PRINTS | PR00367 | 8.0E-12 | 76 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-12 | 98 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MCGGAILAGL IPHRGHRVAA SEFWPNSSFN KPSPFDTYPS PLRNQEPFTL KRPQPTSGDH 60 EQVEKPNAKR QRKNLYRGIR QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AARAYDREAR 120 KIRGKKAKVN FPNEDDHYYT SQNSNTKPFL YQAPTCHFSK GYDSGNVYDA YQIETFHSNG 180 LINEPIVSSG EDDSRSGSEE VTGLLGCNQN VESNNYMGQV KVEEEKLEEK KVMNKEVMVV 240 DLETGEEESE VQKLTEELMA YENFMKFYQI PYLDGQSTAP NGTTQESLVG NLWSFFDDGV 300 DAPVTSAPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 76 | 132 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G126100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002320996.1 | 0.0 | ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | B9I9P1 | 0.0 | B9I9P1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s12090.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6771 | 34 | 49 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 2e-33 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G126100.1 |
Entrez Gene | 7495238 |